ArticleNucleic acids research2012
RegPrecise web services interface: programmatic access to the transcriptional regulatory interactions in bacteria reconstructed by comparative genomics.
Article in Nucleic acids research, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.
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Who cites it
14 citing papers in PubMed, 28 citations in OpenAlex.
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- MntP and YiiP Contribute to Manganese Efflux in Salmonella enterica Serovar Typhimurium under Conditions of Manganese Overload and Nitrosative Stress.Microbiology spectrum · 2022Article
- Calprotectin-Mediated Zinc Chelation Inhibits Pseudomonas aeruginosa Protease Activity in Cystic Fibrosis Sputum.Journal of bacteriology · 2021Article
- Bacterial zinc uptake regulator proteins and their regulons.Biochemical Society transactions · 2018Review
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- Inference of interactions in cyanobacterial-heterotrophic co-cultures via transcriptome sequencing.The ISME journal · 2014Article
- Computational analysis of riboswitch-based regulation.Biochimica et biophysica acta · 2014Review
- DNA-affinity-purified chip (DAP-chip) method to determine gene targets for bacterial two component regulatory systems.Journal of visualized experiments : JoVE · 2014Article
- Network portal: a database for storage, analysis and visualization of biological networks.Nucleic acids research · 2014Article
- RegPrecise 3.0--a resource for genome-scale exploration of transcriptional regulation in bacteria.BMC genomics · 2013Article
- Comparative genomics of metabolic capacities of regulons controlled by cis-regulatory RNA motifs in bacteria.BMC genomics · 2013Article
- EcoCyc: fusing model organism databases with systems biology.Nucleic acids research · 2013Article
- Aureolib - a proteome signature library: towards an understanding of staphylococcus aureus pathophysiology.PloS one · 2013Article
Corrections and comments
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Authors and funding
7 authors at 2 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Web services application programming interface (API) was developed to provide a programmatic access to the regulatory interactions accumulated in the RegPrecise database (http://regprecise.lbl.gov), a core resource on transcriptional regulation for the microbial domain of the Department of Energy (DOE) Systems Biology Knowledgebase. RegPrecise captures and visualize regulogs, sets of genes controlled by orthologous regulators in several closely related bacterial genomes, that were reconstructed by comparative genomics. The current release of RegPrecise 2.0 includes >1400 regulogs controlled either by protein transcription factors or by conserved ribonucleic acid regulatory motifs in >250 genomes from 24 taxonomic groups of bacteria. The reference regulons accumulated in RegPrecise can serve as a basis for automatic annotation of regulatory interactions in newly sequenced genomes. The developed API provides an efficient access to the RegPrecise data by a comprehensive set of 14 web service resources. The RegPrecise web services API is freely accessible at http://regprecise.lbl.gov/RegPrecise/services.jsp with no login requirements.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.