Evidence map›Paper›PMID 22698784›Full record

ArticleBioorganic & medicinal chemistry2012

Self-calibrating viscosity probes: design and subcellular localization.

Marianna Dakanali, Thai H Do, Austin Horn, Akaraphon Chongchivivat, Tuptim Jarusreni, Darcy Lichlyter, Gianni Guizzunti, Mark A Haidekker, Emmanuel A Theodorakis

Open access · greenAbstract read
In one paragraph

Article in Bioorganic & medicinal chemistry, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 28 citations in OpenAlex.

  1. Article
  2. Synthesis of the 3'-Beilstein journal of organic chemistry · 2024
    Article
  3. Article
  4. Article
  5. Fluorescent flippers for mechanosensitive membrane probes.Journal of the American Chemical Society · 2015
    Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Marianna DakanaliDepartment of Chemistry & Biochemistry, University of California, San Diego, 9500 Gilman Drive, MC: 0358, La Jolla, CA 92093-0358, USA.
Thai H Do
Austin Horn
Akaraphon Chongchivivat
Tuptim Jarusreni
Darcy Lichlyter
Gianni Guizzunti
Mark A Haidekker
Emmanuel A Theodorakis
University of California, San Diego · USUniversity of Georgia · USInstitut Pasteur · FR

Funding

Chemical Biology of Caged Garcinia XanthonesR01CA133002 · NCI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI THEODORAKIS, EMMANUEL A · 2008 to 2012
$1.3M
Real-time microviscosity measurement tools for the cellR21RR025358 · NCRR · UNIVERSITY OF GEORGIA · PI HAIDEKKER, MARK ANDREAS · 2009 to 2010
$618k
NCI NIH HHS CA 133002NCI NIH HHS R01 CA133002NCRR NIH HHS 1R21 RR025358NCRR NIH HHS R21 RR025358
6 · The paper itself

Abstract

We describe the design, synthesis and fluorescence profiles of new self-calibrating viscosity dyes in which a coumarin (reference fluorophore) has been covalently linked with a molecular rotor (viscosity sensor). Characterization of their fluorescence properties was made with separate excitation of the units and through resonance energy transfer from the reference to the sensor dye. We have modified the linker and the substitution of the rotor in order to change the hydrophilicity of these probes thereby altering their subcellular localization. For instance, hydrophilic dye 12 shows a homogeneous distribution inside the cell and represents a suitable probe for viscosity measurements in the cytoplasm.

Indexed as

Fluorescence Resonance Energy TransferCalibrationCell Line, TumorCell MembraneCoumarinsFluorescent DyesHeLa CellsHumansHydrophobic and Hydrophilic InteractionsMicroscopy, ConfocalThiophenesViscositycoumarinCoumarinsFluorescent DyesThiophenes

Identifiers

PMID22698784
PMCPMC3390230
OpenAlexW2109040626

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.