Evidence map›Paper›PMID 22698670›Full record

ArticleBiochimica et biophysica acta2012

Helicobacter pylori hydrogenase accessory protein HypA and urease accessory protein UreG compete with each other for UreE recognition.

Stéphane L Benoit, Jonathan L McMurry, Stephanie A Hill, Robert J Maier

Open access · greenAbstract read
In one paragraph

Article in Biochimica et biophysica acta, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
3.5field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 36 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Structural insights into how GTP-dependent conformational changes in a metallochaperone UreG facilitate urease maturation.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Biosynthesis of the urease metallocenter.The Journal of biological chemistry · 2013
    Review
  15. Review
  16. Review
  17. Sumner's legacy: a century of urease crystals and recent structural advances.Critical reviews in biochemistry and molecular biology
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Stéphane L BenoitDepartment of Microbiology, University of Georgia, 805 Biological Sciences Bldg., Athens, GA, USA.
Jonathan L McMurry
Stephanie A Hill
Robert J Maier
Kennesaw State University · USUniversity of Georgia · US

Funding

Amino Acid Repair Activity in Helicobacter pyloriR01AI077569 · NIAID · UNIVERSITY OF GEORGIA · PI MAIER, ROBERT J. · 2009 to 2013
$1.8M
Nickel Metabolism in Helicobacter pyloriR01DK062852 · NIDDK · UNIVERSITY OF GEORGIA (UGA) · PI MAIER, ROBERT J. · 2004 to 2006
$763k
Purification of a Modified Flagellar Export ApparatusR15GM080701 · NIGMS · KENNESAW STATE UNIVERSITY · PI MCMURRY, JONATHAN L · 2007 to 2012
$652k
NIAID NIH HHS R01 AI077569NIDDK NIH HHS R01 DK062852NIGMS NIH HHS R15 GM080701
6 · The paper itself

Abstract

backgroundThe gastric pathogen Helicobacter pylori relies on nickel-containing urease and hydrogenase enzymes in order to colonize the host. Incorporation of Ni(2+) into urease is essential for the function of the enzyme and requires the action of several accessory proteins, including the hydrogenase accessory proteins HypA and HypB and the urease accessory proteins UreE, UreF, UreG and UreH.

methodsOptical biosensing methods (biolayer interferometry and plasmon surface resonance) were used to screen for interactions between HypA, HypB, UreE and UreG.

resultsUsing both methods, affinity constants were found to be 5nM and 13nM for HypA-UreE and 8μM and 14μM for UreG-UreE. Neither Zn(2+) nor Ni(2+) had an effect on the kinetics or stability of the HypA-UreE complex. By contrast, addition of Zn(2+), but not Ni(2+), altered the kinetics and greatly increased the stability of the UreE-UreG complex, likely due in part to Zn(2+)-mediated oligomerization of UreE. Finally our results unambiguously show that HypA, UreE and UreG cannot form a heterotrimeric protein complex in vitro; instead, HypA and UreG compete with each other for UreE recognition. GENERAL SIGNIFICANCE: Factors influencing the pathogen's nickel budget are important to understand pathogenesis and for future drug design.

Indexed as

Bacterial ProteinsBinding, CompetitiveBinding SitesCarrier ProteinsGTP-Binding ProteinsHelicobacter pyloriHydrogenaseMetallochaperonesPhosphate-Binding ProteinsProtein BindingProtein MultimerizationSpectrum AnalysisSurface Plasmon ResonanceUreaseBacterial ProteinsCarrier ProteinsGTP-Binding ProteinsHydrogenaseHypA protein, Helicobacter pyloriHypB protein, bacteriaMetallochaperonesPhosphate-Binding ProteinsUreaseUreE protein, BacteriaureG protein, Bacteria

Identifiers

PMID22698670
PMCPMC4017372
OpenAlexW2021176548

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.