Evidence map›Paper›PMID 22697494›Full record

ArticleFEMS microbiology letters2012

The Acinetobacter regulatory UmuDAb protein cleaves in response to DNA damage with chimeric LexA/UmuD characteristics.

Janelle M Hare, Sabal Adhikari, Kasandra V Lambert, Alexander E Hare, Alison N Grice

Open access · bronzeAbstract read
In one paragraph

Article in FEMS microbiology letters, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 39 citations in OpenAlex.

  1. Review
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  11. Homodimerization and heterodimerization requirements ofCanadian journal of microbiology · 2021
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  13. iTRAQ-Based Comparative Proteomic Analysis ofFrontiers in microbiology · 2019
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  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Janelle M HareDepartment of Biology and Chemistry, Morehead State University, KY, USA. jm.hare@moreheadstate.edu
Sabal Adhikari
Kasandra V Lambert
Alexander E Hare
Alison N Grice
Morehead State University · USUniversity of Kentucky · US

Funding

ZEBRAFISH VISUAL FUNCTION RECOVERY FOLLOWING OPTIC NERVE DAMAGEP20RR016481 · NCRR · UNIVERSITY OF LOUISVILLE · PI BARTON, HAZEL A · 2001 to 2011
$34.8M
Mechanisms of Action of UmuD in Regulating DNA Damage-Induced Genes in a umuC- Deficient mutantR15GM085722 · NIGMS · MOREHEAD STATE UNIVERSITY · PI Janelle M Hare · 2009 to 2026
$1.8M
NCRR NIH HHS E 2P20RR016481-09NCRR NIH HHS P20 RR016481NIGMS NIH HHS R15 1R15GM085722-01A1NIGMS NIH HHS R15 GM085722
6 · The paper itself

Abstract

In the DNA damage response of most bacteria, UmuD forms part of the error-prone (UmuD'(2) )C polymerase V and is activated for this function by self-cleavage after DNA damage. However, the umuD homolog (umuDAb) present throughout the Acinetobacter genus encodes an extra N-terminal region, and in Acinetobacter baylyi, regulates transcription of DNA damage-induced genes. UmuDAb expressed in cells was correspondingly larger (24 kDa) than the Escherichia coli UmuD (15 kDa). DNA damage from mitomycin C or UV exposure caused UmuDAb cleavage in both E. coli wild-type and ΔumuD cells on a timescale resembling UmuD, but did not require UmuD. Like the self-cleaving serine proteases LexA and UmuD, UmuDAb required RecA for cleavage. This cleavage produced a UmuDAb' fragment of a size consistent with the predicted cleavage site of Ala83-Gly84. Site-directed mutations at Ala83 abolished cleavage, as did mutations at either the Ser119 or Lys156 predicted enzymatic residues. Co-expression of the cleavage site mutant and an enzymatic mutant did not allow cleavage, demonstrating a strictly intramolecular mechanism of cleavage that more closely resembles the LexA-type repressors than UmuD. These data show that UmuDAb undergoes a post-translational, LexA-like cleavage event after DNA damage, possibly to achieve its regulatory action.

Indexed as

DNA DamageAcinetobacterAmino Acid SequenceBacterial ProteinsDNA-Directed DNA PolymeraseEscherichia coliEscherichia coli ProteinsGene Expression Regulation, BacterialLexA Repressor ProteinMolecular Sequence DataProtein Processing, Post-TranslationalRec A RecombinasesSequence AlignmentSerine EndopeptidasesUltraviolet RaysBacterial ProteinsDNA-Directed DNA PolymeraseEscherichia coli ProteinsLexA Repressor ProteinRec A RecombinasesSerine EndopeptidasesUmuD protein, E coli

Identifiers

PMID22697494
PMCPMC3475745
OpenAlexW2063169496

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.