Evidence map›Paper›PMID 22697290›Full record

ArticleBMC neuroscience2012

Transcriptome analysis of amoeboid and ramified microglia isolated from the corpus callosum of rat brain.

Rangarajan Parakalan, Boran Jiang, Baby Nimmi, Manivannan Janani, Manikandan Jayapal, Jia Lu, Samuel S W Tay, Eng-Ang Ling, S Thameem Dheen

Open access · goldAbstract read
In one paragraph

Article in BMC neuroscience, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 74 papers.

0numbers the graph read from it
0cells of the map it votes in
74citing papers in PubMed
3.2field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

74 citing papers in PubMed, 119 citations in OpenAlex.

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  18. History of Microglia.Advances in neurobiology · 2024
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14 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 2 countries.

Rangarajan ParakalanDepartment of Anatomy, Yong Loo Lin School of Medicine, National University of Singapore, Blk MD10, 4 Medical Drive, Singapore, 117597, Singapore.
Boran Jiang
Baby Nimmi
Manivannan Janani
Manikandan Jayapal
Jia Lu
Samuel S W Tay
Eng-Ang Ling
S Thameem Dheen
National University of Singapore · SGKing Abdulaziz University · SA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundMicroglia, the resident immune cells of the central nervous system (CNS), have two distinct phenotypes in the developing brain: amoeboid form, known to be amoeboid microglial cells (AMC) and ramified form, known to be ramified microglial cells (RMC). The AMC are characterized by being proliferative, phagocytic and migratory whereas the RMC are quiescent and exhibit a slow turnover rate. The AMC transform into RMC with advancing age, and this transformation is indicative of the gradual shift in the microglial functions. Both AMC and RMC respond to CNS inflammation, and they become hypertrophic when activated by trauma, infection or neurodegenerative stimuli. The molecular mechanisms and functional significance of morphological transformation of microglia during normal development and in disease conditions is not clear. It is hypothesized that AMC and RMC are functionally regulated by a specific set of genes encoding various signaling molecules and transcription factors.

resultsTo address this, we carried out cDNA microarray analysis using lectin-labeled AMC and RMC isolated from frozen tissue sections of the corpus callosum of 5-day and 4-week old rat brain respectively, by laser capture microdissection. The global gene expression profiles of both microglial phenotypes were compared and the differentially expressed genes in AMC and RMC were clustered based on their functional annotations. This genome wide comparative analysis identified genes that are specific to AMC and RMC.

conclusionsThe novel and specific molecules identified from the trancriptome explains the quiescent state functioning of microglia in its two distinct morphological states.

Indexed as

Age FactorsAnimalsAnimals, NewbornCell DifferentiationCell Line, TransformedCell ProliferationCluster AnalysisCorpus CallosumCytokinesCytoskeletonGene Expression ProfilingGene Expression Regulation, DevelopmentalInhibitor of Differentiation Protein 2Laser Capture MicrodissectionMicrogliaMyeloid Cell Leukemia Sequence 1 ProteinCytokinesId2 protein, ratInhibitor of Differentiation Protein 2Myeloid Cell Leukemia Sequence 1 ProteinNerve Tissue ProteinsProto-Oncogene Proteins c-bcl-2Transcription Factors

Identifiers

PMID22697290
PMCPMC3441342
OpenAlexW1971181573

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.