Evidence map›Paper›PMID 22694338›Full record

ArticleJournal of proteome research2012

Proteomic analysis of extracellular matrix from the hepatic stellate cell line LX-2 identifies CYR61 and Wnt-5a as novel constituents of fibrotic liver.

S Tamir Rashid, Jonathan D Humphries, Adam Byron, Ameet Dhar, Janet A Askari, Julian N Selley, David Knight, Robert D Goldin, Mark Thursz, Martin J Humphries

Abstract read
In one paragraph

Article in Journal of proteome research, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers.

0numbers the graph read from it
0cells of the map it votes in
46citing papers in PubMed
3.6field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

46 citing papers in PubMed, 79 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

S Tamir RashidWellcome Trust Centre for Cell-Matrix Research, Faculty of Life Sciences, and Department of Gastrointestinal Sciences, University of Manchester, Oxford Road, Manchester M13 9PT, UK.
Jonathan D Humphries
Adam Byron
Ameet Dhar
Janet A Askari
Julian N Selley
David Knight
Robert D Goldin
Mark Thursz
Martin J Humphries
St Mary's Hospital · GBWellcome Centre for Cell-Matrix Research · GB

Funding

Biotechnology and Biological Sciences Research CouncilWellcome Trust 045225Wellcome Trust 074941
6 · The paper itself

Abstract

Activation of hepatic stellate cells (HSCs) and subsequent uncontrolled accumulation of altered extracellular matrix (ECM) underpin liver fibrosis, a wound healing response to chronic injury, which can lead to organ failure and death. We sought to catalogue the components of fibrotic liver ECM to obtain insights into disease etiology and aid identification of new biomarkers. Cell-derived ECM was isolated from the HSC line LX-2, an in vitro model of liver fibrosis, and compared to ECM from human foreskin fibroblasts (HFFs) as a control. Mass spectrometry analyses of cell-derived ECMs identified, with ≥99% confidence, 61 structural ECM or secreted proteins (48 and 31 proteins for LX-2 and HFF, respectively). Gene ontology enrichment analysis confirmed the enrichment of ECM proteins, and hierarchical clustering coupled with protein-protein interaction network analysis revealed a subset of proteins enriched to fibrotic ECM, highlighting the existence of cell type-specific ECM niches. Thirty-six proteins were enriched to LX-2 ECM as compared to HFF ECM, of which Wnt-5a and CYR61 were validated by immunohistochemistry in human and murine fibrotic liver tissue. Future studies will determine if these and other components may play a role in the etiology of hepatic fibrosis, serve as novel disease biomarkers, or open up new avenues for drug discovery.

Indexed as

AnimalsCell LineCluster AnalysisCysteine-Rich Protein 61Extracellular MatrixFibroblastsHepatic Stellate CellsHumansLiver CirrhosisMiceMice, Inbred C57BLProtein Interaction MappingProtein Interaction MapsProteomeProteomicsProto-Oncogene ProteinsCCN1 protein, humanCysteine-Rich Protein 61ProteomeProto-Oncogene ProteinsWnt-5a ProteinWNT5A protein, humanWnt Proteins

Identifiers

PMID22694338
PMCPMC3411196
OpenAlexW2090970763

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.