ArticleNucleic acids research2012
GeneView: a comprehensive semantic search engine for PubMed.
Article in Nucleic acids research, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
19 citing papers in PubMed.
- A Review on Electronic Health Record Text-Mining for Biomedical Name Entity Recognition in Healthcare Domain.Healthcare (Basel, Switzerland) · 2023Review
- DNA methylation reveals distinct cells of origin for pancreatic neuroendocrine carcinomas and pancreatic neuroendocrine tumors.Genome medicine · 2022Article
- Recent advances of automated methods for searching and extracting genomic variant information from biomedical literature.Briefings in bioinformatics · 2021Review
- VIST - a Variant-Information Search Tool for precision oncology.BMC bioinformatics · 2019Article
- PubTator central: automated concept annotation for biomedical full text articles.Nucleic acids research · 2019Article
- Thalia: semantic search engine for biomedical abstracts.Bioinformatics (Oxford, England) · 2019Article
- Variant information systems for precision oncology.BMC medical informatics and decision making · 2018Article
- LitVar: a semantic search engine for linking genomic variant data in PubMed and PMC.Nucleic acids research · 2018Article
- A Drug-Centric View of Drug Development: How Drugs Spread from Disease to Disease.PLoS computational biology · 2016Article
- Pressing needs of biomedical text mining in biocuration and beyond: opportunities and challenges.Database : the journal of biological databases and curation · 2016Article
- PALM-IST: Pathway Assembly from Literature Mining--an Information Search Tool.Scientific reports · 2015Article
- KnowLife: a versatile approach for constructing a large knowledge graph for biomedical sciences.BMC bioinformatics · 2015Article
- Event-based text mining for biology and functional genomics.Briefings in functional genomics · 2015Review
- Assembly of a comprehensive regulatory network for the mammalian circadian clock: a bioinformatics approach.PloS one · 2015Article
- Semantic annotation for biological information retrieval system.Advances in bioinformatics · 2015Article
- Computational prediction of molecular pathogen-host interactions based on dual transcriptome data.Frontiers in microbiology · 2015Article
- Finding sequences for over 270 orphan enzymes.PloS one · 2014Article
- Ras-mediated deregulation of the circadian clock in cancer.PLoS genetics · 2014Article
- DigSee: Disease gene search engine with evidence sentences (version cancer).Nucleic acids research · 2013Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
5 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Research results are primarily published in scientific literature and curation efforts cannot keep up with the rapid growth of published literature. The plethora of knowledge remains hidden in large text repositories like MEDLINE. Consequently, life scientists have to spend a great amount of time searching for specific information. The enormous ambiguity among most names of biomedical objects such as genes, chemicals and diseases often produces too large and unspecific search results. We present GeneView, a semantic search engine for biomedical knowledge. GeneView is built upon a comprehensively annotated version of PubMed abstracts and openly available PubMed Central full texts. This semi-structured representation of biomedical texts enables a number of features extending classical search engines. For instance, users may search for entities using unique database identifiers or they may rank documents by the number of specific mentions they contain. Annotation is performed by a multitude of state-of-the-art text-mining tools for recognizing mentions from 10 entity classes and for identifying protein-protein interactions. GeneView currently contains annotations for >194 million entities from 10 classes for ∼21 million citations with 271,000 full text bodies. GeneView can be searched at http://bc3.informatik.hu-berlin.de/.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.