Evidence map›Paper›PMID 22692543›Full record

ArticleNature communications2012

SynGAP isoforms exert opposing effects on synaptic strength.

A C McMahon, M W Barnett, T S O'Leary, P N Stoney, M O Collins, S Papadia, J S Choudhary, N H Komiyama, S G N Grant, G E Hardingham and 2 more

Open access · hybridAbstract read
In one paragraph

Article in Nature communications, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 56 papers.

0numbers the graph read from it
0cells of the map it votes in
56citing papers in PubMed
1.6field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

56 citing papers in PubMed, 96 citations in OpenAlex.

  1. Review
  2. Article
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  10. Article
  11. Review
  12. DevelopmentalThe Journal of neuroscience : the official journal of the Society for Neuroscience · 2024
    Article
  13. Haploinsufficiency ofThe Journal of neuroscience : the official journal of the Society for Neuroscience · 2024
    Article
  14. Context-dependent hyperactivity inFrontiers in molecular neuroscience · 2024
    Article
  15. Review
  16. Mouse models ofProceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  17. Liquid-liquid phase separation in synaptopathies.Neuroprotection (Chichester, England) · 2023
    Review
  18. Mouse models ofbioRxiv : the preprint server for biology · 2023
    Article
  19. eNeuro · 2023
    Article
  20. The ALS-Related SynGAP1 Pathogenic Variant Causes Dendritic Spine Loss: Potential Mechanisms of Early-Stage ALS Progression.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 1 country.

A C McMahonCentre for Integrative Physiology, University of Edinburgh, Edinburgh EH8 9XD, UK.
M W Barnett
T S O'Leary
P N Stoney
M O Collins
S Papadia
J S Choudhary
N H Komiyama
S G N Grant
G E Hardingham
D J A Wyllie
P C Kind
University of Edinburgh · GBWellcome Sanger Institute · GB

Funding

Medical Research Council G0300466Medical Research Council G0601584Medical Research Council G0700967Medical Research Council G0902044Medical Research Council G0902044(94018)Wellcome Trust
6 · The paper itself

Abstract

Alternative promoter usage and alternative splicing enable diversification of the transcriptome. Here we demonstrate that the function of Synaptic GTPase-Activating Protein (SynGAP), a key synaptic protein, is determined by the combination of its amino-terminal sequence with its carboxy-terminal sequence. 5' rapid amplification of cDNA ends and primer extension show that different N-terminal protein sequences arise through alternative promoter usage that are regulated by synaptic activity and postnatal age. Heterogeneity in C-terminal protein sequence arises through alternative splicing. Overexpression of SynGAP α1 versus α2 C-termini-containing proteins in hippocampal neurons has opposing effects on synaptic strength, decreasing and increasing miniature excitatory synaptic currents amplitude/frequency, respectively. The magnitude of this C-terminal-dependent effect is modulated by the N-terminal peptide sequence. This is the first demonstration that activity-dependent alternative promoter usage can change the function of a synaptic protein at excitatory synapses. Furthermore, the direction and degree of synaptic modulation exerted by different protein isoforms from a single gene locus is dependent on the combination of differential promoter usage and alternative splicing.

Indexed as

Amino Acid SequenceAnimalsElectrophysiologyHippocampusMass SpectrometryMiceMice, Inbred C57BLMolecular Sequence DataNeuronsProtein Isoformsras GTPase-Activating ProteinsSynapsesProtein Isoformsras GTPase-Activating ProteinsSyngap1 protein, mouse

Identifiers

PMID22692543
PMCPMC3621422
OpenAlexW1995780026

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.