Evidence map›Paper›PMID 22692217›Full record

ArticleThe Journal of biological chemistry2012

Identification of a novel cryptochrome differentiating domain required for feedback repression in circadian clock function.

Sanjoy K Khan, Haiyan Xu, Maki Ukai-Tadenuma, Brittany Burton, Yongmei Wang, Hiroki R Ueda, Andrew C Liu

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 50 papers.

0numbers the graph read from it
0cells of the map it votes in
50citing papers in PubMed
6.4field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

50 citing papers in PubMed, 75 citations in OpenAlex.

  1. Targeting Cryptochromes in Chronic Diseases.Cell biology international · 2025
    Review
  2. Article
  3. Review
  4. A structural decryption of cryptochromes.Frontiers in chemistry · 2024
    Review
  5. Article
  6. Article
  7. Article
  8. Review
  9. The molecular clock gene cryptochrome 1 (Cephalalgia : an international journal of headache · 2021
    Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Review
  16. Review
  17. The human CRY1 tail controls circadian timing by regulating its association with CLOCK:BMAL1.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  18. Article
  19. Vulnerability to helpless behavior is regulated by the circadian clock component CRYPTOCHROME in the mouse nucleus accumbens.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Sanjoy K KhanDepartment of Biological Sciences, University of Memphis, Memphis, Tennessee 38152-0001, USA.
Haiyan Xu
Maki Ukai-Tadenuma
Brittany Burton
Yongmei Wang
Hiroki R Ueda
Andrew C Liu
University of Memphis · USCenter for Genomic Science · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Circadian clocks in mammals are based on a negative feedback loop in which transcriptional repression by the cryptochromes, CRY1 and CRY2, lies at the heart of the mechanism. Despite similarities in sequence, domain structure, and biochemical activity, they play distinct roles in clock function. However, detailed biochemical studies have not been straightforward and Cry function has not been examined in real clock cells using kinetic measurements. In this study, we demonstrate, through cell-based genetic complementation and real-time molecular recording, that Cry1 alone is able to maintain cell-autonomous circadian rhythms, whereas Cry2 cannot. Using this novel functional assay, we identify a cryptochrome differentiating α-helical domain within the photolyase homology region (PHR) of CRY1, designated as CRY1-PHR(313-426), that is required for clock function and distinguishes CRY1 from CRY2. Contrary to speculation, the divergent carboxyl-terminal tail domain (CTD) is dispensable, but serves to modulate rhythm amplitude and period length. Finally, we identify the biochemical basis of their distinct function; CRY1 is a much more potent transcriptional repressor than CRY2, and the strength of repression by various forms of CRY proteins significantly correlates with rhythm amplitude. Taken together, our results demonstrate that CRY1-PHR(313-426), not the divergent CTD, is critical for clock function. These findings provide novel insights into the evolution of the diverse functions of the photolyase/cryptochrome family of flavoproteins and offer new opportunities for mechanistic studies of CRY function.

Indexed as

Circadian ClocksFeedback, PhysiologicalAmino Acid MotifsCryptochromesFibroblastsGene Expression RegulationHEK293 CellsHumansModels, MolecularProtein Structure, TertiaryRecombinant Fusion ProteinsSequence DeletionStructural Homology, ProteinTranscription, GeneticCRY1 protein, humanCRY2 protein, humanCryptochromesRecombinant Fusion Proteins

Identifiers

PMID22692217
PMCPMC3406676
OpenAlexW2026178836

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.