Evidence map›Paper›PMID 22691167›Full record

ArticleBMC microbiology2012

The distribution of plasmids that carry virulence and resistance genes in Staphylococcus aureus is lineage associated.

Alex J McCarthy, Jodi A Lindsay

Open access · goldAbstract read
In one paragraph

Article in BMC microbiology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 91 papers.

0numbers the graph read from it
0cells of the map it votes in
91citing papers in PubMed
6.1field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

91 citing papers in PubMed, 161 citations in OpenAlex.

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  15. Genetic Characterization of Antibiotic-ResistantAntibiotics (Basel, Switzerland) · 2024
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  18. Average Nucleotide Identity basedbioRxiv : the preprint server for biology · 2024
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  19. Article
  20. Investigating genomic diversity ofFrontiers in microbiology · 2024
    Article

31 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Alex J McCarthyCentre for Infection, Division of Clinical Sciences, St George's, University of London, London, UK. amccarth@sgul.ac.uk
Jodi A Lindsay
St George's, University of London · GB

Funding

Wellcome Trust
6 · The paper itself

Abstract

backgroundStaphylococcus aureus is major human and animal pathogen. Plasmids often carry resistance genes and virulence genes that can disseminate through S. aureus populations by horizontal gene transfer (HGT) mechanisms. Sequences of S. aureus plasmids in the public domain and data from multi-strain microarrays were analysed to investigate (i) the distribution of resistance genes and virulence genes on S. aureus plasmids, and (ii) the distribution of plasmids between S. aureus lineages.

resultsA total of 21 plasmid rep gene families, of which 13 were novel to this study, were characterised using a previously proposed classification system. 243 sequenced plasmids were assigned to 39 plasmid groups that each possessed a unique combination of rep genes. We show some resistance genes (including ermC and cat) and virulence genes (including entA, entG, entJ, entP) were associated with specific plasmid groups suggesting there are genetic pressures preventing recombination of these genes into novel plasmid groups. Whole genome microarray analysis revealed that plasmid rep, resistance and virulence genes were associated with S. aureus lineages, suggesting restriction-modification (RM) barriers to HGT of plasmids between strains exist. Conjugation transfer (tra) complex genes were rare.

conclusionThis study argues that genetic pressures are restraining the spread of resistance and virulence genes amongst S. aureus plasmids, and amongst S. aureus populations, delaying the emergence of fully virulent and resistant strains.

Indexed as

Drug Resistance, BacterialGenes, BacterialAnimalsCluster AnalysisComputational BiologyDNA Restriction-Modification EnzymesGene Transfer, HorizontalHumansMicroarray AnalysisPlasmidsStaphylococcal InfectionsStaphylococcus aureusVirulence FactorsDNA Restriction-Modification EnzymesVirulence Factors

Identifiers

PMID22691167
PMCPMC3406946
OpenAlexW2117686662

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.