Evidence map›Paper›PMID 22690083›Full record

ArticleWorld journal of gastroenterology2012

Aberrant methylation and downregulation of sall3 in human hepatocellular carcinoma.

Xue-Xi Yang, Jing-Zhe Sun, Fen-Xia Li, Ying-Song Wu, Hong-Yan Du, Wei Zhu, Xiang-Hong Li, Ming Li

Open access · hybridAbstract read
In one paragraph

Article in World journal of gastroenterology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.8field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 17 citations in OpenAlex.

  1. Trial
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  5. Article
  6. Review
  7. Epigenetic modification ofJournal of Cancer · 2018
    Article
  8. Epigenetic silencing ofClinical epigenetics · 2017
    Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 2 countries.

Xue-Xi YangSchool of Biotechnology, Southern Medical University, Guangzhou 510515, Guangdong Province, China.
Jing-Zhe Sun
Fen-Xia Li
Ying-Song Wu
Hong-Yan Du
Wei Zhu
Xiang-Hong Li
Ming Li
Southern Medical University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

aimTo investigated whether sall3 transcription was regulated by promoter CpG island hypermethylation in hepatocellular carcinoma (HCC).

methodsThe cell lines Huh7, HepG2, SK-HEP1, SMMC7721, Bel7402, QGY7703 and a cohort of 38 HCC tissue specimens and corresponding nontumorous tissues were subjected to analysis for sall3 promoter CpG island methylation and mRNA transcription. sall3 promoter CpG island methylation levels were determined using the MassARRAY platform and mRNA transcription levels of the gene were detected by quantitative real-time polymerase chain reaction.

resultsThe levels of sall3 mRNA were decreased by more than twofold in 33 of 38 tumor tissues compared to adjacent noncancerous tissues. Among these 33 tumor tissues with lower levels of sall3 mRNA, 24 showed higher levels of methylation. Based on these results, we hypothesized that the decrease in sall3 mRNA transcription level was likely due to promoter CpG island hypermethylation. Changes in sall3 mRNA transcription and promoter CpG island methylation were determined in the above six cell lines after treatment with 0, 0.1, 0.5 and 2.5 μmol 5-aza-2-deoxycytidine, a demethylating agent. Promoter CpG island methylation levels decreased in a dose-dependent manner in all six cell lines, while the mRNA transcription level increased dose-dependently in Huh7, HepG2, SK-HEP1 and SMMC7721 cells and irregularly in Bel7402 and QGY7703 cells.

conclusionThese results indicated that promoter CpG island hypermethylation contributes to the downregulation of sall3 mRNA transcription in HCC.

Indexed as

DNA MethylationGene Expression Regulation, NeoplasticAzacitidineCarcinoma, HepatocellularCell Line, TumorCpG IslandsDecitabineDose-Response Relationship, DrugDown-RegulationHomeodomain ProteinsHumansLiver NeoplasmsModels, GeneticPromoter Regions, GeneticRNA, MessengerTranscription FactorsAzacitidineDecitabineHomeodomain ProteinsRNA, MessengerSALL3 protein, humanTranscription FactorsAberrant methylationDown regulation mRNA transcriptionHepatocellular carcinomasall3

Identifiers

PMID22690083
PMCPMC3370011
OpenAlexW2166901579

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.