Evidence map›Paper›PMID 22689986›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2012

CD45-deficient severe combined immunodeficiency caused by uniparental disomy.

Joseph L Roberts, Rebecca H Buckley, Biao Luo, Jianming Pei, Alla Lapidus, Suraj Peri, Qiong Wei, Jinwook Shin, Roberta E Parrott, Roland L Dunbrack and 3 more

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 82 citations in OpenAlex.

  1. Data-driven consideration of genetic disorders for global genomic newborn screening programs.Genetics in medicine : official journal of the American College of Medical Genetics · 2025
    Article
  2. γδ T Cells and Inborn Errors of Immunity.European journal of immunology · 2025
    Review
  3. Article
  4. Review
  5. Review
  6. Article
  7. Case Report: A Novel Homozygous Mutation inFrontiers in genetics · 2021
    Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. New genetic discoveries and primary immune deficiencies.Clinical reviews in allergy & immunology · 2014
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 1 country.

Joseph L RobertsDepartment of Pediatrics, Duke University Medical Center, Durham, NC 27710, USA.
Rebecca H Buckley
Biao Luo
Jianming Pei
Alla Lapidus
Suraj Peri
Qiong Wei
Jinwook Shin
Roberta E Parrott
Roland L Dunbrack
Joseph R Testa
Xiao-Ping Zhong
David L Wiest
Fox Chase Cancer Center · USDuke University · USNeuroDevelopment Center · USDuke Medical Center · US

Funding

WORD PROCESSING CENTER--COREP30CA006927 · NCI · RESEARCH INST OF FOX CHASE CAN CTR · PI Margaret von Mehren · 1985 to 2026
$138.8M
TRANSGENIC AND CHIMERIC MOUSE COREP30DK050306 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI Ken Hashigiwa Cadwell · 1997 to 2026
$32.5M
Regulation of peripheral T cell toleranceR01AI079088 · NIAID · DUKE UNIVERSITY · PI ZHONG, XIAOPING · 2008 to 2019
$3.5M
MECHANISMS OF ALLOGENEIC STEM CELL EDUCATION IN SCIDR01AI047605 · NIAID · DUKE UNIVERSITY · PI BUCKLEY, REBECCA H · 1999 to 2010
$3.0M
DEVELOPMENT AND PERSISTENCE OF IMMUNITY IN SCID CHIMERASR01AI042951 · NIAID · DUKE UNIVERSITY · PI BUCKLEY, REBECCA H · 1999 to 2008
$2.7M
TSC1-mTOR signaling and T cell toleranceR01AI101206 · NIAID · DUKE UNIVERSITY · PI ZHONG, XIAOPING · 2012 to 2016
$1.9M
A Murine Model of Chronic Autoimmune Hepatitis and Liver FibrosisR01AI076357 · NIAID · DUKE UNIVERSITY · PI ZHONG, XIAOPING · 2008 to 2012
$1.5M
Identification of Disease-Causing Mutations in SCID Using Exome-Wide SequencingRC1HL099617 · NHLBI · DUKE UNIVERSITY · PI ROBERTS, JOSEPH L · 2009 to 2010
$1000k
Mechanisms of Allogeneic Stem Cell Education in SCIDR21AI047605 · NIAID · DUKE UNIVERSITY · PI BUCKLEY, REBECCA H · 2003 to 2003
$343k
NCI NIH HHS P01CA06927NCI NIH HHS P30 CA006927NHLBI NIH HHS RC1 HL099617NIAID NIH HHS AI042951NIAID NIH HHS AI047605NIAID NIH HHS R01 AI042951NIAID NIH HHS R01 AI047605NIAID NIH HHS R01 AI076357NIAID NIH HHS R01 AI079088NIAID NIH HHS R01 AI101206NIAID NIH HHS R21 AI047605NIDDK NIH HHS P30 DK050306NIDDK NIH HHS P30-DK-50306
6 · The paper itself

Abstract

Analysis of the molecular etiologies of SCID has led to important insights into the control of immune cell development. Most cases of SCID result from either X-linked or autosomal recessive inheritance of mutations in a known causative gene. However, in some cases, the molecular etiology remains unclear. To identify the cause of SCID in a patient known to lack the protein-tyrosine phosphatase CD45, we used SNP arrays and whole-exome sequencing. The patient's mother was heterozygous for an inactivating mutation in CD45 but the paternal alleles exhibited no detectable mutations. The patient exhibited a single CD45 mutation identical to the maternal allele. Patient SNP array analysis revealed no change in copy number but loss of heterozygosity for the entire length of chromosome 1 (Chr1), indicating that disease was caused by uniparental disomy (UPD) with isodisomy of the entire maternal Chr1 bearing the mutant CD45 allele. Nonlymphoid blood cells and other mesoderm- and ectoderm-derived tissues retained UPD of the entire maternal Chr1 in this patient, who had undergone successful bone marrow transplantation. Exome sequencing revealed mutations in seven additional genes bearing nonsynonymous SNPs predicted to have deleterious effects. These findings are unique in representing a reported case of SCID caused by UPD and suggest UPD should be considered in SCID and other recessive disorders, especially when the patient appears homozygous for an abnormal gene found in only one parent. Evaluation for alterations in other genes affected by UPD should also be considered in such cases.

Indexed as

Uniparental DisomyHeterozygoteHumansLeukocyte Common AntigensLoss of HeterozygosityPolymorphism, Single NucleotideSevere Combined ImmunodeficiencyLeukocyte Common Antigens

Identifiers

PMID22689986
PMCPMC3387083
OpenAlexW2025683558

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.