Evidence map›Paper›PMID 22689654›Full record

ArticleThe Journal of cell biology2012

Integrity of the P-site is probed during maturation of the 60S ribosomal subunit.

Cyril Bussiere, Yaser Hashem, Sucheta Arora, Joachim Frank, Arlen W Johnson

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of cell biology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 58 papers.

0numbers the graph read from it
0cells of the map it votes in
58citing papers in PubMed
5.1field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

58 citing papers in PubMed, 76 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Review
  6. Archaea/eukaryote-specific ribosomal proteins - guardians of a complex structure.Computational and structural biotechnology journal · 2023
    Review
  7. Review
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Ribosome assembly coming into focus.Nature reviews. Molecular cell biology · 2019
    Review
  17. Article
  18. How Ribosomes Translate Cancer.Cancer discovery · 2017
    Review
  19. Eukaryotic ribosome assembly, transport and quality control.Nature structural & molecular biology · 2017
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Cyril BussiereSection of Molecular Genetics and Microbiology, Institute for Cellular and Molecular Biology, University of Texas at Austin, Austin, TX 78712, USA.
Yaser Hashem
Sucheta Arora
Joachim Frank
Arlen W Johnson
The University of Texas at Austin · USColumbia University · USHoward Hughes Medical Institute · US

Funding

STRUCTURE ANALYSIS OF MACROMOLECULAR ASSEMBLIESR01GM029169 · NIGMS · WADSWORTH CENTER · PI FRANK, JOACHIM · 1985 to 2019
$6.1M
MRNA DEGRADATION AND TRANSLATION CONTROL IN YEASTR01GM053655 · NIGMS · UNIVERSITY OF TEXAS AUSTIN · PI JOHNSON, ARLEN W · 1995 to 2017
$5.1M
Howard Hughes Medical InstituteNIGMS NIH HHS GM53655NIGMS NIH HHS R01 GM029169NIGMS NIH HHS R01 GM053655NIGMS NIH HHS R01 GM29169
6 · The paper itself

Abstract

Eukaryotic ribosomes are preassembled in the nucleus and mature in the cytoplasm. Release of the antiassociation factor Tif6 by the translocase-like guanosine triphosphatase Efl1 is a critical late maturation step. In this paper, we show that a loop of Rpl10 that embraces the P-site transfer ribonucleic acid was required for release of Tif6, 90 Å away. Mutations in this P-site loop blocked 60S maturation but were suppressed by mutations in Tif6 or Efl1. Molecular dynamics simulations of the mutant Efl1 proteins suggest that they promote a conformation change in Efl1 equivalent to changes that elongation factor G and eEF2 undergo during translocation. These results identify molecular signaling from the P-site to Tif6 via Efl1, suggesting that the integrity of the P-site is interrogated during maturation. We propose that Efl1 promotes a functional check of the integrity of the 60S subunit before its first round of translation.

Indexed as

Catalytic DomainCell NucleusGTP PhosphohydrolasesModels, MolecularMolecular Dynamics SimulationMutationProtein ConformationRibosomal Protein L10Ribosomal ProteinsRibosome Subunits, Large, EukaryoticRNA, MessengerSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsGTP PhosphohydrolasesRIA1 protein, S cerevisiaeRibosomal ProteinsRNA, MessengerRPL10 protein, S cerevisiaeSaccharomyces cerevisiae Proteins

Identifiers

PMID22689654
PMCPMC3373404
OpenAlexW2063089090

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.