Evidence map›Paper›PMID 22687822›Full record

ArticleJournal of biomedical informatics2012

A study of terminology auditors' performance for UMLS semantic type assignments.

Huanying Helen Gu, Gai Elhanan, Yehoshua Perl, George Hripcsak, James J Cimino, Julia Xu, Yan Chen, James Geller, C Paul Morrey

Abstract read
In one paragraph

Article in Journal of biomedical informatics, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Article
  2. Article
  3. A review of auditing techniques for the Unified Medical Language System.Journal of the American Medical Informatics Association : JAMIA · 2020
    Review
  4. Auditing the Assignments of Top-Level Semantic Types in the UMLS Semantic Network to UMLS Concepts.Proceedings. IEEE International Conference on Bioinformatics and Biomedicine · 2017
    Article
  5. Article
  6. Article
  7. Article
  8. A tribal abstraction network for SNOMED CT target hierarchies without attribute relationships.Journal of the American Medical Informatics Association : JAMIA · 2015
    Article
  9. Review
  10. Scalable quality assurance for large SNOMED CT hierarchies using subject-based subtaxonomies.Journal of the American Medical Informatics Association : JAMIA · 2015
    Article
  11. Sculpting the UMLS Refined Semantic Network.Online journal of public health informatics · 2014
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Huanying Helen GuNew York Institute of Technology, New York, NY, USA. hgu03@nyit.edu
Gai Elhanan
Yehoshua Perl
George Hripcsak
James J Cimino
Julia Xu
Yan Chen
James Geller
C Paul Morrey

Funding

Partitioning to Support Auditing and Extending the UMLSR01LM008445 · NLM · NEW JERSEY INSTITUTE OF TECHNOLOGY · PI PERL, YEHOSHUA · 2006 to 2009
$1.7M
Biomedical Translational Research Information System (BTRIS) Data Reuse ProtocolZIACL000904 · CLC · CLINICAL CENTER · PI CIMINO, JAMES · 2009 to 2014
$0k
NLM NIH HHS R01 LM008445NLM NIH HHS R01LM008445-01A2
6 · The paper itself

Abstract

Auditing healthcare terminologies for errors requires human experts. In this paper, we present a study of the performance of auditors looking for errors in the semantic type assignments of complex UMLS concepts. In this study, concepts are considered complex whenever they are assigned combinations of semantic types. Past research has shown that complex concepts have a higher likelihood of errors. The results of this study indicate that individual auditors are not reliable when auditing such concepts and their performance is low, according to various metrics. These results confirm the outcomes of an earlier pilot study. They imply that to achieve an acceptable level of reliability and performance, when auditing such concepts of the UMLS, several auditors need to be assigned the same task. A mechanism is then needed to combine the possibly differing opinions of the different auditors into a final determination. In the current study, in contrast to our previous work, we used a majority mechanism for this purpose. For a sample of 232 complex UMLS concepts, the majority opinion was found reliable and its performance for accuracy, recall, precision and the F-measure was found statistically significantly higher than the average performance of individual auditors.

Indexed as

SemanticsHumansReproducibility of ResultsTerminology as TopicUnified Medical Language System

Identifiers

PMID22687822
PMCPMC3504177

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.