Evidence map›Paper›PMID 22685576›Full record

ArticlePloS one2012

Characterization of bacteria in ballast water using MALDI-TOF mass spectrometry.

Kaveh Emami, Vahid Askari, Matthias Ullrich, Khwajah Mohinudeen, Arga Chandrashekar Anil, Lidita Khandeparker, J Grant Burgess, Ehsan Mesbahi

Abstract read
In one paragraph

Article in PloS one, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

  1. Review
  2. Saturated Iso-Type Fatty Acids from the Marine BacteriumPharmaceuticals (Basel, Switzerland) · 2024
    Article
  3. Article
  4. Article
  5. Rapid Identification ofFrontiers in microbiology · 2020
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. MALDI-TOF MS Affords Discrimination ofFrontiers in microbiology · 2018
    Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Kaveh EmamiSchool of Biology, Newcastle University, Newcastle upon Tyne, United Kingdom. kaveh.emami@ncl.ac.uk
Vahid Askari
Matthias Ullrich
Khwajah Mohinudeen
Arga Chandrashekar Anil
Lidita Khandeparker
J Grant Burgess
Ehsan Mesbahi

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

To evaluate a rapid and cost-effective method for monitoring bacteria in ballast water, several marine bacterial isolates were characterized by matrix-assisted laser desorption ionization-time of flight mass spectrometry (MALDI-TOF MS). Since International Maritime Organization (IMO) regulations are concerned with the unintended transportation of pathogenic bacteria through ballast water, emphasis was placed on detecting species of Vibrio, enterococci and coliforms. Seawater samples collected from the North Sea were incubated in steel ballast tanks and the presence of potentially harmful species of Pseudomonas was also investigated. At the genus-level, the identification of thirty six isolates using MALDI-TOF MS produced similar results to those obtained by 16S rRNA gene sequencing. No pathogenic species were detected either by 16S rRNA gene analysis or by MALDI-TOF MS except for the opportunistically pathogenic bacterium Pseudomonas aeruginosa. In addition, in house software that calculated the correlation coefficient values (CCV) of the mass spectral raw data and their variation was developed and used to allow the rapid and efficient identification of marine bacteria in ballast water for the first time.

Indexed as

Water MicrobiologyBacteriaBacteriological TechniquesDNA, BacterialEnterococcusMolecular Sequence DataNorth SeaProteus vulgarisPseudoalteromonasPseudomonas aeruginosaPseudomonas stutzeriReproducibility of ResultsRNA, Ribosomal, 16SSeawaterSequence Analysis, DNASpectrometry, Mass, Matrix-Assisted Laser Desorption-IonizationDNA, BacterialRNA, Ribosomal, 16S

Identifiers

PMID22685576
PMCPMC3369924

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.