Evidence map›Paper›PMID 22685561›Full record

ArticlePloS one2012

Recruitment of histone deacetylase 3 to the interferon-A gene promoters attenuates interferon expression.

Pierre Génin, Rongtuan Lin, John Hiscott, Ahmet Civas

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
0.8field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 24 citations in OpenAlex.

  1. Article
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  3. Review
  4. Review
  5. Article
  6. Article
  7. Histone deacetylase 4 promotes type I interferon signaling, restricts DNA viruses, and is degraded via vaccinia virus protein C6.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  8. Review
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  10. Article
  11. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 3 countries.

Pierre GéninCentre National de la Recherche Scientifique-FRE3235, Paris Descartes University, Paris, France.
Rongtuan Lin
John Hiscott
Ahmet Civas
McGill University · CADélégation Paris 5 · FRUniversité Paris Cité · FR

Funding

Autophagy-mediated immune responses to oncolytic VSVR21CA192185 · NCI · VGTI FLORIDA · PI HISCOTT, JOHN · 2015 to 2017
$364k
CIHRNCI NIH HHS R21 CA192185
6 · The paper itself

Abstract

backgroundInduction of Type I Interferon (IFN) genes constitutes an essential step leading to innate immune responses during virus infection. Sendai virus (SeV) infection of B lymphoid Namalwa cells transiently induces the transcriptional expression of multiple IFN-A genes. Although transcriptional activation of IFN-A genes has been extensively studied, the mechanism responsible for the attenuation of their expression remains to be determined. PRINCIPAL

findingsIn this study, we demonstrate that virus infection of Namalwa cells induces transient recruitment of HDAC3 (histone deacetylase 3) to IFN-A promoters. Analysis of chromatin-protein association by Chip-QPCR demonstrated that recruitment of interferon regulatory factor (IRF)3 and IRF7, as well as TBP correlated with enhanced histone H3K9 and H3K14 acetylation, whereas recruitment of HDAC3 correlated with inhibition of histone H3K9/K14 acetylation, removal of IRF7 and TATA-binding protein (TBP) from IFN-A promoters and inhibition of virus-induced IFN-A gene transcription. Additionally, HDAC3 overexpression reduced, and HDAC3 depletion by siRNA enhanced IFN-A gene expression. Furthermore, activation of IRF7 enhanced histone H3K9/K14 acetylation and IFN-A gene expression, whereas activation of both IRF7 and IRF3 led to recruitment of HDAC3 to the IFN-A gene promoters, resulting in impaired histone H3K9 acetylation and attenuation of IFN-A gene transcription.

conclusionAltogether these data indicate that reversal of histone H3K9/K14 acetylation by HDAC3 is required for attenuation of IFN-A gene transcription during viral infection.

Indexed as

Gene Expression RegulationAcetylationBurkitt LymphomaCell Line, TumorChromatin ImmunoprecipitationGene Expression ProfilingHEK293 CellsHistone Deacetylase 3Histone DeacetylasesHistonesHost-Pathogen InteractionsHumansImmunoblottingInterferon-alphaInterferon Regulatory Factor-3Interferon Regulatory Factor-7Histone Deacetylase 3Histone DeacetylasesHistonesInterferon-alphaInterferon Regulatory Factor-3Interferon Regulatory Factor-7IRF3 protein, humanIRF7 protein, humanLysineProtein IsoformsTATA-Box Binding Protein

Identifiers

PMID22685561
PMCPMC3369917
OpenAlexW2093857954

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.