Evidence map›Paper›PMID 22685281›Full record

ArticleJournal of bacteriology2012

Transcription of the oprF gene of Pseudomonas aeruginosa is dependent mainly on the SigX sigma factor and is sucrose induced.

Emeline Bouffartigues, Gwendoline Gicquel, Alexis Bazire, Manjeet Bains, Olivier Maillot, Julien Vieillard, Marc G J Feuilloley, Nicole Orange, R E W Hancock, Alain Dufour and 1 more

Abstract read
In one paragraph

Article in Journal of bacteriology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed.

  1. Antibiotic resistance inFrontiers in microbiology · 2026
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  11. Gaseous NOScientific reports · 2022
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  12. Review
  13. Cell Envelope Stress Response in Pseudomonas aeruginosa.Advances in experimental medicine and biology · 2022
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  15. TacklingBiomolecules · 2020
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  18. Membrane-Interactive Compounds FromFrontiers in microbiology · 2020
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  19. The Temperature-Regulation ofFrontiers in microbiology · 2020
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  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Emeline BouffartiguesLaboratoire de Microbiologie-Signaux et Micro-Environnement, LMSM, Université de Rouen, Rouen, France.
Gwendoline Gicquel
Alexis Bazire
Manjeet Bains
Olivier Maillot
Julien Vieillard
Marc G J Feuilloley
Nicole Orange
R E W Hancock
Alain Dufour
Sylvie Chevalier

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The OprF porin is the major outer membrane protein of Pseudomonas aeruginosa. OprF is involved in several crucial functions, including cell structure, outer membrane permeability, environmental sensing, and virulence. The oprF gene is preceded by the sigX gene, which encodes the poorly studied extracytoplasmic function (ECF) sigma factor SigX. Three oprF promoters were previously identified. Two intertwined promoters dependent on σ(70) and SigX are located in the sigX-oprF intergenic region, whereas a promoter dependent on the ECF AlgU lies within the sigX gene. An additional promoter was found in the cmpX-sigX intergenic region. In this study, we dissected the contribution of each promoter region and of each sigma factor to oprF transcription using transcriptional fusions. In Luria-Bertani (LB) medium, the oprF-proximal region (sigX-oprF intergenic region) accounted for about 80% of the oprF transcription, whereas the AlgU-dependent promoter had marginal activity. Using the sigX mutant PAOSX, we observed that the SigX-dependent promoter was largely predominant over the σ(70)-dependent promoter. oprF transcription was increased in response to low NaCl or high sucrose concentrations, and this induced transcription was strongly impaired in the absence of SigX. The lack of OprF itself increased oprF transcription. Since these conditions led to cell wall alterations, oprF transcription could be activated by signals triggered by perturbation of the cell envelope.

Indexed as

Gene Expression Regulation, BacterialTranscriptional ActivationTranscription, GeneticBacterial ProteinsCulture MediaGene DeletionPromoter Regions, GeneticPseudomonas aeruginosaSigma FactorSodium ChlorideSucroseBacterial ProteinsCulture MediaOprF protein, Pseudomonas aeruginosaSigma FactorSodium ChlorideSucrose

Identifiers

PMID22685281
PMCPMC3416264

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.