Evidence map›Paper›PMID 22683509›Full record

ArticleMolecular & cellular proteomics : MCP2012

Rapid phosphoproteomic and transcriptomic changes in the rhizobia-legume symbiosis.

Christopher M Rose, Muthusubramanian Venkateshwaran, Jeremy D Volkening, Paul A Grimsrud, Junko Maeda, Derek J Bailey, Kwanghyun Park, Maegen Howes-Podoll, Désirée den Os, Li Huey Yeun and 4 more

Open access · hybridAbstract read
In one paragraph

Article in Molecular & cellular proteomics : MCP, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 59 papers.

0numbers the graph read from it
0cells of the map it votes in
59citing papers in PubMed
15.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

59 citing papers in PubMed, 125 citations in OpenAlex.

  1. Review
  2. Cholesterol sulfate signaling facilitates persistent colonization of mucoid-coccoid H. pylori in gastric environment.International microbiology : the official journal of the Spanish Society for Microbiology · 2026
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  9. Review
  10. Review
  11. Frontiers in plant science · 2022
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 3 institutions in 1 country.

Christopher M RoseDepartment of Chemistry, University of Wisconsin, Madison, Wisconsin 53706, USA.
Muthusubramanian Venkateshwaran
Jeremy D Volkening
Paul A Grimsrud
Junko Maeda
Derek J Bailey
Kwanghyun Park
Maegen Howes-Podoll
Désirée den Os
Li Huey Yeun
Michael S Westphall
Michael R Sussman
Jean-Michel Ané
Joshua J Coon
University of Wisconsin–Madison · USEnergy Center of Wisconsin · USPennsylvania State University · US

Funding

Chemistry-Biology Interface Training ProgramT32GM008505 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI BLACKWELL, HELEN E. · 1993 to 2023
$9.8M
NIGMS NIH HHS T32 GM008505NIGMS NIH HHS T32GM008505
6 · The paper itself

Abstract

Symbiotic associations between legumes and rhizobia usually commence with the perception of bacterial lipochitooligosaccharides, known as Nod factors (NF), which triggers rapid cellular and molecular responses in host plants. We report here deep untargeted tandem mass spectrometry-based measurements of rapid NF-induced changes in the phosphorylation status of 13,506 phosphosites in 7739 proteins from the model legume Medicago truncatula. To place these phosphorylation changes within a biological context, quantitative phosphoproteomic and RNA measurements in wild-type plants were compared with those observed in mutants, one defective in NF perception (nfp) and one defective in downstream signal transduction events (dmi3). Our study quantified the early phosphorylation and transcription dynamics that are specifically associated with NF-signaling, confirmed a dmi3-mediated feedback loop in the pathway, and suggested "cryptic" NF-signaling pathways, some of them being also involved in the response to symbiotic arbuscular mycorrhizal fungi.

Indexed as

SymbiosisLipopolysaccharidesMedicago truncatulaMycorrhizaePhosphoproteinsPhosphorylationPlant ProteinsRhizobiumSignal TransductionSinorhizobium melilotiTandem Mass SpectrometryTranscriptomelipid-linked oligosaccharidesLipopolysaccharidesPhosphoproteinsPlant Proteins

Identifiers

PMID22683509
PMCPMC3434772
OpenAlexW2134314409

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.