Evidence map›Paper›PMID 22682744›Full record

ArticleStructure (London, England : 1993)2012

Adaptor-dependent degradation of a cell-cycle regulator uses a unique substrate architecture.

Keith L Rood, Nathaniel E Clark, Patrick R Stoddard, Scott C Garman, Peter Chien

Open access · bronzeAbstract read
In one paragraph

Article in Structure (London, England : 1993), 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
1.7field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 29 citations in OpenAlex.

  1. Global analysis of protein degradation reveals instability of diverse regulators inProceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  2. Article
  3. Article
  4. Cargo competition for a dimerization interface restricts and stabilizes a bacterial protease adaptor.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  5. Review
  6. Article
  7. Article
  8. The Essential Role of ClpXP inFrontiers in molecular biosciences · 2017
    Article
  9. Regulated Proteolysis in Bacteria: Caulobacter.Annual review of genetics · 2016
    Review
  10. Review
  11. Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Regulated proteolysis in bacterial development.FEMS microbiology reviews · 2014
    Review
  19. Critical clamp loader processing by an essential AAA+ protease in Caulobacter crescentus.Proceedings of the National Academy of Sciences of the United States of America · 2013
    Article
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Keith L RoodDepartment of Biochemistry and Molecular Biology, University of Massachusetts, Amherst, Amherst, MA 01003, USA.
Nathaniel E Clark
Patrick R Stoddard
Scott C Garman
Peter Chien
University of Massachusetts Amherst · US

Funding

Structural Studies of Lysosomal Storage DiseasesR01DK076877 · NIDDK · UNIVERSITY OF MASSACHUSETTS AMHERST · PI GARMAN, SCOTT C. · 2007 to 2021
$4.3M
Specificity, Regulation and Proteomic Profiling of an Essential AAA+ ProteaseR00GM084157 · NIGMS · UNIVERSITY OF MASSACHUSETTS AMHERST · PI CHIEN, PETER · 2010 to 2012
$742k
NIDDK NIH HHS R01 DK076877NIDDK NIH HHS R01 DK76877NIGMS NIH HHS R00 GM084157
6 · The paper itself

Abstract

In Caulobacter crescentus, the ClpXP protease degrades several crucial cell-cycle regulators, including the phosphodiesterase PdeA. Degradation of PdeA requires the response regulator CpdR and signals a morphological transition in concert with initiation of DNA replication. Here, we report the structure of a Per-Arnt-Sim (PAS) domain of PdeA and show that it is necessary for CpdR-dependent degradation in vivo and in vitro. CpdR acts as an adaptor, tethering the amino-terminal PAS domain to ClpXP and promoting recognition of the weak carboxyl-terminal degron of PdeA, a combination that ensures processive proteolysis. We identify sites on the PAS domain needed for CpdR recognition and find that one subunit of the PdeA dimer can be delivered to ClpXP by its partner. Finally, we show that improper stabilization of PdeA in vivo alters cellular behavior. These results introduce an adaptor/substrate pair for ClpXP and reveal broad diversity in adaptor-mediated proteolysis.

Indexed as

Adaptor Proteins, Signal TransducingBacterial ProteinsBinding SitesCaulobacter crescentusCell CycleCrystallography, X-RayDimerizationDNA ReplicationEndopeptidase ClpEscherichia coliKineticsModels, MolecularPhosphoric Diester HydrolasesProtein BindingProtein Structure, SecondaryProtein Structure, TertiaryAdaptor Proteins, Signal TransducingBacterial ProteinsEndopeptidase ClpPhosphoric Diester HydrolasesRecombinant Proteins

Identifiers

PMID22682744
PMCPMC3410435
OpenAlexW1969865618

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.