Evidence map›Paper›PMID 22682299›Full record

ArticleBioorganic & medicinal chemistry2012

Covalent protein-oligonucleotide conjugates by copper-free click reaction.

Santoshkumar L Khatwani, Jun Sung Kang, Daniel G Mullen, Michael A Hast, Lorena S Beese, Mark D Distefano, T Andrew Taton

Abstract read
In one paragraph

Article in Bioorganic & medicinal chemistry, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed.

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  15. In situ protein detection with enhanced specificity using DNA-conjugated antibodies and proximity ligation.Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc · 2018
    Article
  16. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Santoshkumar L KhatwaniDepartment of Chemistry, University of Minnesota, Minneapolis, MN 55455, USA.
Jun Sung Kang
Daniel G Mullen
Michael A Hast
Lorena S Beese
Mark D Distefano
T Andrew Taton

Funding

Enzymatic Protein LabelingR01GM084152 · NIGMS · UNIVERSITY OF MINNESOTA · PI DISTEFANO, MARK D · 2010 to 2019
$2.6M
Nanostructured Cancer VaccinesR01CA122603 · NCI · UNIVERSITY OF MINNESOTA · PI TATON, T. ANDREW · 2007 to 2010
$995k
NCI NIH HHS CA122603NCI NIH HHS R01 CA122603NIGMS NIH HHS GM084152NIGMS NIH HHS R01 GM084152
6 · The paper itself

Abstract

Covalent protein-oligodeoxynucleotide (protein-ODN) conjugates are useful in a number of biological applications, but synthesizing discrete conjugates-where the connection between the two components is at a defined location in both the protein and the ODN-under mild conditions with significant yield can be a challenge. In this article, we demonstrate a strategy for synthesizing discrete protein-ODN conjugates using strain-promoted azide-alkyne [3+2] cycloaddition (SPAAC, a copper-free 'click' reaction). Azide-functionalized proteins, prepared by enzymatic prenylation of C-terminal CVIA tags with synthetic azidoprenyl diphosphates, were 'clicked' to ODNs that had been modified with a strained dibenzocyclooctyne (DIBO-ODN). The resulting protein-ODN conjugates were purified and characterized by size-exclusion chromatography and gel electrophoresis. We find that the yields and reaction times of the SPAAC bioconjugation reactions are comparable to those previously reported for copper-catalyzed azide-alkyne [3+2] cycloaddition (CuAAC) bioconjugation, but require no catalyst. The same SPAAC chemistry was used to immobilize azide-modified proteins onto surfaces, using surface-bound DIBO-ODN as a heterobifunctional linker. Cu-free click bioconjugation of proteins to ODNs is a simple and versatile alternative to Cu-catalyzed click methods.

Indexed as

Click ChemistryAlkynesAzidesCopperGreen Fluorescent ProteinsLuminescent ProteinsOligonucleotidesProteinsRed Fluorescent ProteinAlkynesAzidesCopperenhanced green fluorescent proteinGreen Fluorescent ProteinsLuminescent ProteinsOligonucleotidesProteinsRed Fluorescent Protein

Identifiers

PMID22682299
PMCPMC3682506

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.