Evidence map›Paper›PMID 22682253›Full record

ArticleCell2012

Functional repurposing revealed by comparing S. pombe and S. cerevisiae genetic interactions.

Adam Frost, Marc G Elgort, Onn Brandman, Clinton Ives, Sean R Collins, Lakshmi Miller-Vedam, Jimena Weibezahn, Marco Y Hein, Ina Poser, Matthias Mann and 2 more

Abstract read
In one paragraph

Article in Cell, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 105 papers.

0numbers the graph read from it
0cells of the map it votes in
105citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

105 citing papers in PubMed.

  1. Article
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  5. Article
  6. Review
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  11. Article
  12. Article
  13. STRIPAK, a fundamental signaling hub of eukaryotic development.Microbiology and molecular biology reviews : MMBR · 2024
    Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Review
  20. Article

45 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Adam FrostDepartment of Biochemistry, Huntsman Cancer Institute, University of Utah, School of Medicine, Salt Lake City, 84112, USA. frost@biochem.utah.edu
Marc G Elgort
Onn Brandman
Clinton Ives
Sean R Collins
Lakshmi Miller-Vedam
Jimena Weibezahn
Marco Y Hein
Ina Poser
Matthias Mann
Anthony A Hyman
Jonathan S Weissman

Funding

UTAH REGIONAL CANCER CENTERP30CA042014 · NCI · UTAH STATE HIGHER EDUCATION SYSTEM--UNIVERSITY OF UTAH · PI Jared P Rutter · 1986 to 2026
$72.6M
MULTIDISCIPLINARY CANCER RESEARCH TRAINING PROGRAMT32CA093247 · NCI · UNIVERSITY OF UTAH · PI AYER, DONALD E · 2002 to 2011
$5.2M
Howard Hughes Medical InstituteNCI NIH HHS 5T32 CA93247-9NCI NIH HHS P30 CA042014NCI NIH HHS T32 CA093247
6 · The paper itself

Abstract

We present a genetic interaction map of pairwise measures including ∼40% of nonessential S. pombe genes. By comparing interaction maps for fission and budding yeast, we confirmed widespread conservation of genetic relationships within and between complexes and pathways. However, we identified an important subset of orthologous complexes that have undergone functional "repurposing": the evolution of divergent functions and partnerships. We validated three functional repurposing events in S. pombe and mammalian cells and discovered that (1) two lumenal sensors of misfolded ER proteins, the kinase/nuclease Ire1 and the glucosyltransferase Gpt1, act together to mount an ER stress response; (2) ESCRT factors regulate spindle-pole-body duplication; and (3) a membrane-protein phosphatase and kinase complex, the STRIPAK complex, bridges the cis-Golgi, the centrosome, and the outer nuclear membrane to direct mitotic progression. Each discovery opens new areas of inquiry and-together-have implications for model organism-based research and the evolution of genetic systems.

Indexed as

Epistasis, GeneticBiological EvolutionEndosomal Sorting Complexes Required for TransportMembrane GlycoproteinsMitosisMultiprotein ComplexesProtein Interaction MapsProtein Serine-Threonine KinasesSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSchizosaccharomycesSpindle ApparatusUnfolded Protein ResponseEndosomal Sorting Complexes Required for TransportIRE1 protein, S cerevisiaeMembrane GlycoproteinsMultiprotein ComplexesProtein Serine-Threonine KinasesSaccharomyces cerevisiae Proteins

Identifiers

PMID22682253
PMCPMC3613983

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.