Evidence map›Paper›PMID 22679222›Full record

ArticlePlant physiology2012

A Medicago truncatula tobacco retrotransposon insertion mutant collection with defects in nodule development and symbiotic nitrogen fixation.

Catalina I Pislariu, Jeremy D Murray, JiangQi Wen, Viviane Cosson, RajaSekhara Reddy Duvvuru Muni, Mingyi Wang, Vagner A Benedito, Andry Andriankaja, Xiaofei Cheng, Ivone Torres Jerez and 8 more

Open access · hybridAbstract read
In one paragraph

Article in Plant physiology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed
15.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed, 109 citations in OpenAlex.

  1. Optimizing Management of Alfalfa (Plants (Basel, Switzerland) · 2025
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  4. Identification and Characterization of Common Bean (Plants (Basel, Switzerland) · 2023
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  9. A collection of novelFrontiers in plant science · 2023
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  11. TheFrontiers in plant science · 2022
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  15. TheFrontiers in plant science · 2021
    Article
  16. Article
  17. Article
  18. The rhizobial autotransporter determines the symbiotic nitrogen fixation activity ofProceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 5 institutions in 4 countries.

Catalina I PislariuPlant Biology Division, Samuel Roberts Noble Foundation, Ardmore, Oklahoma 73401, USA.
Jeremy D Murray
JiangQi Wen
Viviane Cosson
RajaSekhara Reddy Duvvuru Muni
Mingyi Wang
Vagner A Benedito
Andry Andriankaja
Xiaofei Cheng
Ivone Torres Jerez
Samuel Mondy
Shulan Zhang
Mark E Taylor
Million Tadege
Pascal Ratet
Kirankumar S Mysore
Rujin Chen
Michael K Udvardi
Noble Research Institute · USJohn Innes Centre · GBOklahoma State University Institute of Technology · USBASF (Germany) · DEMonsanto (India) · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A Tnt1-insertion mutant population of Medicago truncatula ecotype R108 was screened for defects in nodulation and symbiotic nitrogen fixation. Primary screening of 9,300 mutant lines yielded 317 lines with putative defects in nodule development and/or nitrogen fixation. Of these, 230 lines were rescreened, and 156 lines were confirmed with defective symbiotic nitrogen fixation. Mutants were sorted into six distinct phenotypic categories: 72 nonnodulating mutants (Nod-), 51 mutants with totally ineffective nodules (Nod+ Fix-), 17 mutants with partially ineffective nodules (Nod+ Fix+/-), 27 mutants defective in nodule emergence, elongation, and nitrogen fixation (Nod+/- Fix-), one mutant with delayed and reduced nodulation but effective in nitrogen fixation (dNod+/- Fix+), and 11 supernodulating mutants (Nod++Fix+/-). A total of 2,801 flanking sequence tags were generated from the 156 symbiotic mutant lines. Analysis of flanking sequence tags revealed 14 insertion alleles of the following known symbiotic genes: NODULE INCEPTION (NIN), DOESN'T MAKE INFECTIONS3 (DMI3/CCaMK), ERF REQUIRED FOR NODULATION, and SUPERNUMERARY NODULES (SUNN). In parallel, a polymerase chain reaction-based strategy was used to identify Tnt1 insertions in known symbiotic genes, which revealed 25 additional insertion alleles in the following genes: DMI1, DMI2, DMI3, NIN, NODULATION SIGNALING PATHWAY1 (NSP1), NSP2, SUNN, and SICKLE. Thirty-nine Nod- lines were also screened for arbuscular mycorrhizal symbiosis phenotypes, and 30 mutants exhibited defects in arbuscular mycorrhizal symbiosis. Morphological and developmental features of several new symbiotic mutants are reported. The collection of mutants described here is a source of novel alleles of known symbiotic genes and a resource for cloning novel symbiotic genes via Tnt1 tagging.

Indexed as

Genes, PlantMedicago truncatulaMorphogenesisMutagenesis, InsertionalMutationMycorrhizaeNicotianaNitrogen FixationPhenotypePlant Root NodulationRetroelementsRoot Nodules, PlantSymbiosisRetroelements

Identifiers

PMID22679222
PMCPMC3425206
OpenAlexW2156304975

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.