Evidence map›Paper›PMID 22678995›Full record

ArticleAmerican journal of medical genetics. Part A2012

Studies of TBX4 and chromosome 17q23.1q23.2: an uncommon cause of nonsyndromic clubfoot.

W Lu, C A Bacino, B S Richards, C Alvarez, J E VanderMeer, M Vella, N Ahituv, N Sikka, F R Dietz, S H Blanton and 1 more

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In one paragraph

Article in American journal of medical genetics. Part A, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed, 1 pooled it
2.1field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 1 synthesis or guideline pooled it, 44 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Article
  4. Article
  5. Review
  6. Molecular Function and Contribution ofAmerican journal of respiratory and critical care medicine · 2023
    Review
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  8. Article
  9. Identification and Functional Evaluation of a NovelInternational journal of molecular sciences · 2022
    Article
  10. Article
  11. Article
  12. Rare andJournal of medical genetics · 2020
    Article
  13. Integrated Bioinformatics Analysis Reveals Potential Pathway Biomarkers and Their Interactions for Clubfoot.Medical science monitor : international medical journal of experimental and clinical research · 2020
    Article
  14. The genetics of isolated and syndromic clubfoot.Journal of children's orthopaedics · 2019
    Article
  15. Article
  16. Identification ofGenetics · 2018
    Article
  17. Oncotarget · 2017
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 6 institutions in 2 countries.

W LuDepartment of Pediatrics, University of Texas Medical School at Houston, Houston, Texas 77030, USA.
C A Bacino
B S Richards
C Alvarez
J E VanderMeer
M Vella
N Ahituv
N Sikka
F R Dietz
S H Blanton
J T Hecht
University of California, San Francisco · USUniversity of Miami · USBaylor College of Medicine · USScottish Rite Hospital · USUniversity of British Columbia · CAUniversity of Iowa · US

Funding

Characterization of regulatory elements leading to human limb malformationsR01HD059862 · NICHD · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI AHITUV, NADAV, BEJERANO, GILL · 2009 to 2013
$2.2M
Genetic Studies of Clubfoot (ITEV)R01HD043342 · NICHD · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI HECHT, JACQUELINE T · 2006 to 2010
$1.7M
NICHD NIH HHS R01 HD043342NICHD NIH HHS R01-HD043342-05NICHD NIH HHS R01 HD059862NICHD NIH HHS R01HD059862
6 · The paper itself

Abstract

Clubfoot is a common birth defect characterized by inward posturing and rigid downward displacement of one or both feet. The etiology of syndromic forms of clubfoot is varied and the causes of isolated clubfoot are not well understood. A microduplication of 2.2 Mb on chromosome 17q23.1q23.2 which includes T-box 4 (TBX4), a hindlimb-specific gene, and 16 other genes was recently identified in 3 of 66 families reported as nonsyndromic clubfoot, but additional non-foot malformations place them in the syndromic clubfoot category. Our study assesses whether variation in or around TBX4 contributes to nonsyndromic clubfoot. To determine whether this microduplication was a common cause of nonsyndromic clubfoot, 605 probands (from 148 multiplex and 457 simplex families) with nonsyndromic clubfoot were evaluated by copy number and oligonucleotide array CGH testing modalities. Only one multiplex family (0.68%) that had 16 with clubfoot and 9 with other foot anomalies, had a 350 kb microduplication, which included the complete duplication of TBX4 and NACA2 and partial duplication of BRIP1. The microduplication was transmitted in an autosomal dominant pattern and all with the microduplication had a range of phenotypes from short wide feet and toes to bilateral clubfoot. Minimal evidence was found for an association between TBX4 and clubfoot and no pathogenic sequence variants were identified in the two known TBX4 hindlimb enhancer elements. Altogether, these results demonstrate that variation in and around the TBX4 gene and the 17q23.1q23.2 microduplication are not a frequent cause of this common orthopedic birth defect and narrows the 17q23.1q23.2 nonsyndromic clubfoot-associated region.

Indexed as

Chromosome DuplicationChromosomes, Human, Pair 17AllelesBase SequenceClubfootDNA Copy Number VariationsEnhancer Elements, GeneticFemaleHumansMalePedigreePhenotypePolymorphism, Single NucleotideT-Box Domain ProteinsT-Box Domain ProteinsTBX4 protein, human

Identifiers

PMID22678995
PMCPMC3381434
OpenAlexW2026095656

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.