Evidence map›Paper›PMID 22678060›Full record

ArticleHuman molecular genetics2012

The autoimmunity-associated BLK haplotype exhibits cis-regulatory effects on mRNA and protein expression that are prominently observed in B cells early in development.

Kim R Simpfendorfer, Lina M Olsson, Nataly Manjarrez Orduño, Houman Khalili, Alyssa M Simeone, Matthew S Katz, Annette T Lee, Betty Diamond, Peter K Gregersen

Open access · bronzeAbstract read
In one paragraph

Article in Human molecular genetics, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed, 1 pooled it
2.7field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 1 synthesis or guideline pooled it, 49 citations in OpenAlex.

  1. Pooled it
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  12. Association ofFrontiers in genetics · 2020
    Article
  13. BLK and BANK1 polymorphisms and interactions are associated in Mexican patients with systemic lupus erythematosus.Inflammation research : official journal of the European Histamine Research Society ... [et al.] · 2019
    Article
  14. Article
  15. Review
  16. Article
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  19. DNA-reactive B cells in lupus.Current opinion in immunology · 2016
    Review
  20. Recent Advances in Defining the Genetic Basis of Rheumatoid Arthritis.Annual review of genomics and human genetics · 2016
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Kim R SimpfendorferRobert S. Boas Center for Genomics & Human Genetics, Feinstein Institute for Medical Research, Manhasset, NY 11030, USA.
Lina M Olsson
Nataly Manjarrez Orduño
Houman Khalili
Alyssa M Simeone
Matthew S Katz
Annette T Lee
Betty Diamond
Peter K Gregersen
Center for Human Genetics · USFeinstein Institute for Medical Research · US

Funding

Genes and Phenotype (GAP) studies of immunologic and inflammatory pathwaysRC2AR059092 · NIAMS · FEINSTEIN INSTITUTE FOR MEDICAL RESEARCH · PI DIAMOND, BETTY, GREGERSEN, PETER K. · 2009 to 2010
$2.5M
NIAMS NIH HHS RC2 AR059092NIAMS NIH HHS RC2AR059092
6 · The paper itself

Abstract

The gene B lymphocyte kinase (BLK) is associated with rheumatoid arthritis, systemic lupus erythematosus and several other autoimmune disorders. The disease risk haplotype is known to be associated with reduced expression of BLK mRNA transcript in human B cell lines; however, little is known about cis-regulation of BLK message or protein levels in native cell types. Here, we show that in primary human B lymphocytes, cis-regulatory effects of disease-associated single nucleotide polymorphisms in BLK are restricted to naïve and transitional B cells. Cis-regulatory effects are not observed in adult B cells in later stages of differentiation. Allelic expression bias was also identified in primary human T cells from adult peripheral and umbilical cord blood (UCB), thymus and tonsil, although mRNA levels were reduced compared with B cells. Allelic regulation of Blk expression at the protein level was confirmed in UCB B cell subsets by intracellular staining and flow cytometry. Blk protein expression in CD4(+) and CD8(+) T cells was documented by western blot analysis; however, differences in protein expression levels by BLK genotype were not observed in any T cell subset. Blk allele expression differences at the protein level are thus restricted to early B cells, indicating that the involvement of Blk in the risk for autoimmune disease likely acts during the very early stages of B cell development.

Indexed as

AdultAllelesAllelic ImbalanceAntibody SpecificityAutoimmunityB-LymphocytesCell LineFetal BloodHaplotypesHomozygoteHumansPolymorphism, Single NucleotideRegulatory Sequences, Nucleic AcidRisk FactorsRNA, Messengersrc-Family Kinasesprotein-tyrosine kinase p55(blk)RNA, Messengersrc-Family Kinases

Identifiers

PMID22678060
PMCPMC3412385
OpenAlexW2164064529

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.