Evidence map›Paper›PMID 22677387›Full record

ArticleBiophysical journal2012

Degradation of fungal prion HET-s(218-289) induces formation of a generic amyloid fold.

William Wan, Holger Wille, Jan Stöhr, Ulrich Baxa, Stanley B Prusiner, Gerald Stubbs

Abstract read
In one paragraph

Article in Biophysical journal, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Review
  5. The Structure of PrPPathogens (Basel, Switzerland) · 2018
    Review
  6. Article
  7. Article
  8. Structural Biology of PrP Prions.Cold Spring Harbor perspectives in medicine · 2017
    Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Fungal prion HET-s as a model for structural complexity and self-propagation in prions.Proceedings of the National Academy of Sciences of the United States of America · 2014
    Article
  16. Article
  17. Article
  18. Review
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

William WanDepartment of Biological Sciences and Center for Structural Biology, Vanderbilt University, Nashville, Tennessee, USA.
Holger Wille
Jan Stöhr
Ulrich Baxa
Stanley B Prusiner
Gerald Stubbs
University of California, San Francisco · USVanderbilt University · USNational Institutes of Health · US

Funding

VIRAL DEGENERATIVE DEMENTING DISEASE IN AGING (SUPP)P01AG002132 · NIA · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI SALI, ANDREJ · 1985 to 2024
$51.7M
X-RAY STUDY OF HORMONE-RECEPTOR AND PROTEIN-ANTIBODY COMPLEXESP41RR007707 · NCRR · UNIVERSITY OF CHICAGO · PI YANG, XIANGZHONG · 2002 to 2011
$17.3M
X-RAY STUDIES OF NEUROFIBRILLARY TANGLES IN ALZHEIMER'S DISEASE BRAIN TISSUEP41RR008630 · NCRR · ILLINOIS INSTITUTE OF TECHNOLOGY · PI IRVING, THOMAS C · 2001 to 2011
$14.4M
MOLECULAR BIOPHYSICS TRAINING PROGRAM AT VANDERBILTT32GM008320 · NIGMS · VANDERBILT UNIVERSITY · PI CHAZIN, WALTER J. · 1989 to 2023
$7.9M
NCRR NIH HHS P41 RR007707NCRR NIH HHS P41 RR008630NCRR NIH HHS RR-007707NCRR NIH HHS RR-008630NIA NIH HHS AG002132NIA NIH HHS P01 AG002132NIGMS NIH HHS T32 GM008320NIGMS NIH HHS T32-GM008320-21
6 · The paper itself

Abstract

The prion-forming domain of the fungal prion protein HET-s, HET-s(218-289), is known from solid-state NMR studies to have a β-solenoidal structure; the β-solenoid has the cross-β structure characteristic of all amyloids, but is inherently more complex than the generic stacked β-sheets found in studies of small synthetic peptides. At low pH HET-s(218-289) has also been reported to form an alternative structure, which has not been characterized. We have confirmed by x-ray fiber diffraction that HET-s(218-289) adopts a β-solenoidal structure at neutral pH, and shown that at low pH, it forms either a β-solenoid or a stacked β-sheet structure, depending on the integrity of the protein and the conditions of fibrillization. The low pH stacked-sheet structure is usually formed only by proteolyzed HET-s(218-289), but intact HET-s(218-289) can form stacked sheets when seeded with proteolyzed stacked-sheet HET-s(218-289). The polymorphism of HET-s parallels the structural differences between the infectious brain-derived and the much less infectious recombinant mammalian prion protein PrP. Taken together, these observations suggest that the functional or pathological forms of amyloid proteins are more complex than the simple generic stacked-sheet amyloids commonly formed by short peptides.

Indexed as

ProteolysisAmino Acid SequenceAmyloidAnimalsBenzothiazolesElectrophoresis, Polyacrylamide GelFluorescenceFungal ProteinsHydrogen-Ion ConcentrationMass SpectrometryMolecular Sequence DataPodosporaPrionsProtein BindingThiazolesX-Ray DiffractionAmyloidBenzothiazolesFungal ProteinsHET-S protein, Podospora anserinaPrionsThiazolesthioflavin T

Identifiers

PMID22677387
PMCPMC3353098
OpenAlexW2042835601

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.