Evidence map›Paper›PMID 22675596›Full record

ArticleStandards in genomic sciences2012

Complete genome sequence of Halopiger xanaduensis type strain (SH-6(T)).

Iain Anderson, Brian J Tindall, Manfred Rohde, Susan Lucas, James Han, Alla Lapidus, Jan-Fang Cheng, Lynne Goodwin, Sam Pitluck, Lin Peters and 11 more

Abstract read
In one paragraph

Article in Standards in genomic sciences, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
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  3. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors.

Iain Anderson
Brian J Tindall
Manfred Rohde
Susan Lucas
James Han
Alla Lapidus
Jan-Fang Cheng
Lynne Goodwin
Sam Pitluck
Lin Peters
Amrita Pati
Natalia Mikhailova
Ioanna Pagani
Hazuki Teshima
Cliff Han
Roxanne Tapia
Miriam Land
Tanja Woyke
Hans-Peter Klenk
Nikos Kyrpides
Natalia Ivanova

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Halopiger xanaduensis is the type species of the genus Halopiger and belongs to the euryarchaeal family Halobacteriaceae. H. xanaduensis strain SH-6, which is designated as the type strain, was isolated from the sediment of a salt lake in Inner Mongolia, Lake Shangmatala. Like other members of the family Halobacteriaceae, it is an extreme halophile requiring at least 2.5 M salt for growth. We report here the sequencing and annotation of the 4,355,268 bp genome, which includes one chromosome and three plasmids. This genome is part of a Joint Genome Institute (JGI) Community Sequencing Program (CSP) project to sequence diverse haloarchaeal genomes.

Indexed as

ArchaeaEuryarchaeotaextreme halophileHalobacteriaceae

Identifiers

PMID22675596
PMCPMC3368405

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.