Evidence map›Paper›PMID 22675585›Full record

ArticleStandards in genomic sciences2011

Complete genome sequence of the filamentous gliding predatory bacterium Herpetosiphon aurantiacus type strain (114-95(T)).

Hajnalka Kiss, Markus Nett, Nicole Domin, Karin Martin, Julia A Maresca, Alex Copeland, Alla Lapidus, Susan Lucas, Kerrie W Berry, Tijana Glavina Del Rio and 18 more

Open access · goldAbstract read
In one paragraph

Article in Standards in genomic sciences, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
1.2field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 55 citations in OpenAlex.

  1. APlants (Basel, Switzerland) · 2025
    Article
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  3. Article
  4. Review
  5. Article
  6. Article
  7. Review
  8. The potential of facultative predatoryFrontiers in microbiology · 2022
    Review
  9. Spatial Variation ofPlants (Basel, Switzerland) · 2021
    Article
  10. Article
  11. Article
  12. Article
  13. Engineering Pseudochelin Production in Myxococcus xanthus.Applied and environmental microbiology · 2018
    Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Antibiotics from predatory bacteria.Beilstein journal of organic chemistry · 2016
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

28 authors at 7 institutions in 2 countries.

Hajnalka Kiss
Markus Nett
Nicole Domin
Karin Martin
Julia A Maresca
Alex Copeland
Alla Lapidus
Susan Lucas
Kerrie W Berry
Tijana Glavina Del Rio
Eileen Dalin
Hope Tice
Sam Pitluck
Paul Richardson
David Bruce
Lynne Goodwin
Cliff Han
John C Detter
Jeremy Schmutz
Thomas Brettin
Miriam Land
Loren Hauser
Nikos C Kyrpides
Natalia Ivanova
Markus Göker
Tanja Woyke
Hans-Peter Klenk
Donald A Bryant
Joint Genome Institute · USLeibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. - Hans-Knöll-Institut (HKI) · DELos Alamos National Laboratory · USLeibniz Institute DSMZ – German Collection of Microorganisms and Cell Cultures · DEOak Ridge National Laboratory · USPennsylvania State University · USUniversity of Delaware · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Herpetosiphon aurantiacus Holt and Lewin 1968 is the type species of the genus Herpetosiphon, which in turn is the type genus of the family Herpetosiphonaceae, type family of the order Herpetosiphonales in the phylum Chloroflexi. H. aurantiacus cells are organized in filaments which can rapidly glide. The species is of interest not only because of its rather isolated position in the tree of life, but also because Herpetosiphon ssp. were identified as predators capable of facultative predation by a wolf pack strategy and of degrading the prey organisms by excreted hydrolytic enzymes. The genome of H. aurantiacus strain 114-95(T) is the first completely sequenced genome of a member of the family Herpetosiphonaceae. The 6,346,587 bp long chromosome and the two 339,639 bp and 99,204 bp long plasmids with a total of 5,577 protein-coding and 77 RNA genes was sequenced as part of the DOE Joint Genome Institute Program DOEM 2005.

Indexed as

ChemoorganoheterotrophicChloroflexiDOEM2005ensheathed filamentsfree-livingglidingGram-negativeHerpetosiphonaceaepredator

Identifiers

PMID22675585
PMCPMC3368417
OpenAlexW2063060370

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.