Evidence map›Paper›PMID 22675581›Full record

ArticleStandards in genomic sciences2011

Complete genome sequence of Parvibaculum lavamentivorans type strain (DS-1(T)).

David Schleheck, Michael Weiss, Sam Pitluck, David Bruce, Miriam L Land, Shunsheng Han, Elizabeth Saunders, Roxanne Tapia, Chris Detter, Thomas Brettin and 8 more

Open access · goldAbstract read
In one paragraph

Article in Standards in genomic sciences, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 40 citations in OpenAlex.

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  17. The state of standards in genomic sciences.Standards in genomic sciences · 2011
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 5 institutions in 3 countries.

David Schleheck
Michael Weiss
Sam Pitluck
David Bruce
Miriam L Land
Shunsheng Han
Elizabeth Saunders
Roxanne Tapia
Chris Detter
Thomas Brettin
James Han
Tanja Woyke
Lynne Goodwin
Len Pennacchio
Matt Nolan
Alasdair M Cook
Staffan Kjelleberg
Torsten Thomas
Los Alamos National Laboratory · USJoint Genome Institute · USUniversity of Konstanz · DEOak Ridge National Laboratory · USUNSW Sydney · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Parvibaculum lavamentivorans DS-1(T) is the type species of the novel genus Parvibaculum in the novel family Rhodobiaceae (formerly Phyllobacteriaceae) of the order Rhizobiales of Alphaproteobacteria. Strain DS-1(T) is a non-pigmented, aerobic, heterotrophic bacterium and represents the first tier member of environmentally important bacterial communities that catalyze the complete degradation of synthetic laundry surfactants. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 3,914,745 bp long genome with its predicted 3,654 protein coding genes is the first completed genome sequence of the genus Parvibaculum, and the first genome sequence of a representative of the family Rhodobiaceae.

Indexed as

aerobicGram-negativeParvibaculum lavamentivorans DS-1Rhodobiaceaesurfactant biodegradation

Identifiers

PMID22675581
PMCPMC3368416
OpenAlexW2101682234

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.