Evidence map›Paper›PMID 22675081›Full record

ArticleNeurology2012

Exome sequencing in an SCA14 family demonstrates its utility in diagnosing heterogeneous diseases.

Anna Sailer, Sonja W Scholz, J Raphael Gibbs, Arianna Tucci, Janel O Johnson, Nicholas W Wood, Vincent Plagnol, Holger Hummerich, Jinhui Ding, Dena Hernandez and 5 more

Open access · bronzeAbstract read
In one paragraph

Article in Neurology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
2.5field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 40 citations in OpenAlex.

  1. Article
  2. Genetic aspects of ataxias in a cohort of Turkish patients.Neurological sciences : official journal of the Italian Neurological Society and of the Italian Society of Clinical Neurophysiology · 2024
    Article
  3. Article
  4. Novel mutation in exon11 ofFrontiers in genetics · 2023
    Article
  5. Article
  6. Article
  7. Genotype-phenotype correlations, dystonia and disease progression in spinocerebellar ataxia type 14.Movement disorders : official journal of the Movement Disorder Society · 2018
    Article
  8. Article
  9. Article
  10. Next-generation sequencing in neuromuscular diseases.Current opinion in neurology · 2016
    Review
  11. Article
  12. Review
  13. Article
  14. Review
  15. Article
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

15 authors at 1 institution in 3 countries.

Anna SailerDepartment of Molecular Neuroscience and Reta Lila Weston Laboratories, Institute of Neurology, University College London, London, UK.
Sonja W Scholz
J Raphael Gibbs
Arianna Tucci
Janel O Johnson
Nicholas W Wood
Vincent Plagnol
Holger Hummerich
Jinhui Ding
Dena Hernandez
John Hardy
Howard J Federoff
Bryan J Traynor
Andrew B Singleton
Henry Houlden
Georgetown University · US

Funding

Assessment of Candidate Loci in Neurological diseasesZIAAG000957 · NIA · NATIONAL INSTITUTE ON AGING · PI SINGLETON, ANDREW · 2009 to 2024
$12.2M
Genetic analysis in families with neurological diseaseZIAAG000958 · NIA · NATIONAL INSTITUTE ON AGING · PI SINGLETON, ANDREW · 2009 to 2024
$10.9M
Genome wide SNP analysis in Amyotrophic Lateral SclerosisZIAAG000933 · NIA · NATIONAL INSTITUTE ON AGING · PI TRAYNOR, BRYAN · 2009 to 2025
$9.8M
Whole Genome Screen in families with Parkinson's diseaseZ01AG000958 · NIA · NATIONAL INSTITUTE ON AGING · PI SINGLETON, ANDREW B · 2003 to 2008
$1.4M
Department of HealthMedical Research Council G0701075Medical Research Council G0802760Medical Research Council G1001253Medical Research Council G108/638Medical Research Council MC_U123160651NIA NIH HHS Z01 AG000958-08.Parkinson's UK G-0907Wellcome Trust
6 · The paper itself

Abstract

objectiveGenetic heterogeneity is common in many neurologic disorders. This is particularly true for the hereditary ataxias where at least 36 disease genes or loci have been described for spinocerebellar ataxia and over 100 genes for neurologic disorders that present primarily with ataxia. Traditional genetic testing of a large number of candidate genes delays diagnosis and is expensive. In contrast, recently developed genomic techniques, such as exome sequencing that targets only the coding portion of the genome, offer an alternative strategy to rapidly sequence all genes in a comprehensive manner. Here we describe the use of exome sequencing to investigate a large, 5-generational British kindred with an autosomal dominant, progressive cerebellar ataxia in which conventional genetic testing had not revealed a causal etiology.

methodsTwenty family members were seen and examined; 2 affected individuals were clinically investigated in detail without a genetic or acquired cause being identified. Exome sequencing was performed in one patient where coverage was comprehensive across the known ataxia genes, excluding the known repeat loci which should be examined using conventional analysis.

resultsA novel p.Arg26Gly change in the PRKCG gene, mutated in SCA14, was identified. This variant was confirmed using Sanger sequencing and showed segregation with disease in the entire family.

conclusionsThis work demonstrates the utility of exome sequencing to rapidly screen heterogeneous genetic disorders such as the ataxias. Exome sequencing is more comprehensive, faster, and significantly cheaper than conventional Sanger sequencing, and thus represents a superior diagnostic screening tool in clinical practice.

Indexed as

AdolescentAdultAgedArginineExomeGenetic TestingGlycineHumansMiddle AgedMutationPedigreeProtein Kinase CSpinocerebellar AtaxiasYoung AdultArginineGlycineProtein Kinase Cprotein kinase C gamma

Identifiers

PMID22675081
PMCPMC3390538
OpenAlexW2170215851

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.