Evidence map›Paper›PMID 22674993›Full record

ArticleJournal of virology2012

Solution structure, conformational dynamics, and CD4-induced activation in full-length, glycosylated, monomeric HIV gp120.

Miklos Guttman, Maria Kahn, Natalie K Garcia, Shiu-Lok Hu, Kelly K Lee

Abstract read
In one paragraph

Article in Journal of virology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
46citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

46 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. HIV Genome-Wide Protein Associations: a Review of 30 Years of Research.Microbiology and molecular biology reviews : MMBR · 2016
    Pooled it
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  19. Protein stability: a crystallographer's perspective.Acta crystallographica. Section F, Structural biology communications · 2016
    Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Miklos GuttmanDepartment of Medicinal Chemistry, University of Washington, Seattle, Washington, USA.
Maria Kahn
Natalie K Garcia
Shiu-Lok Hu
Kelly K Lee

Funding

YILMA SIV VACCINIA VACCINE TRIALP51RR000166 · NCRR · UNIVERSITY OF WASHINGTON · PI CHAMBERLAIN, JEFFREY S · 1985 to 2011
$161.1M
Virology CoreP30AI027767 · NIAID · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI Paul A. Goepfert · 1988 to 2026
$84.1M
ZWITTERION SURFACTANT DDMAB FOR IMPROV STABIL OF PROTEINP41RR001209 · NCRR · STANFORD UNIVERSITY · PI REESE, MICHAEL LLOYD · 1985 to 2011
$38.9M
Pharmacological Sciences SupplementT32GM007750 · NIGMS · UNIVERSITY OF WASHINGTON · PI ATKINS, WILLIAM M · 1985 to 2023
$12.6M
Glycan modification, CD4 independence, and Env immunogenicityR01AI076170 · NIAID · UNIVERSITY OF WASHINGTON · PI HU, SHIU-LOK · 2008 to 2011
$3.0M
Influenza Hemagglutinin: Structure, Dynamics, and Cooperativity During FusionR00GM080352 · NIGMS · UNIVERSITY OF WASHINGTON · PI LEE, KELLY KEISEN · 2009 to 2011
$740k
Investigating the Architecture of HIV Envelope GlycoproteinF32GM097805 · NIGMS · UNIVERSITY OF WASHINGTON · PI GUTTMAN, MIKLOS · 2012 to 2013
$101k
NCRR NIH HHS P01-RR000166NCRR NIH HHS P41 RR001209NCRR NIH HHS P41-RR001209NCRR NIH HHS P51 RR000166NIAID NIH HHS P30 AI027767NIAID NIH HHS P30-AI027767NIAID NIH HHS R01 AI076170NIAID NIH HHS R01-AI076170NIGMS NIH HHS F32 GM097805NIGMS NIH HHS R00 GM080352NIGMS NIH HHS R00-GM080352NIGMS NIH HHS T32 GM007750NIGMS NIH HHS T32-GM007750
6 · The paper itself

Abstract

The gp120 subunit of the HIV Env glycoprotein is responsible for receptor interactions leading to viral entry and is a primary target for neutralizing antibodies. Most structural studies have focused on the heavily truncated, deglycosylated gp120 core, leaving fundamental aspects of the glycoprotein that are responsible for immune evasion and receptor-induced activation unresolved. Here we investigate full-length, glycosylated HIV gp120 in unliganded and CD4-bound forms by using small-angle X-ray scattering to visualize global structural reorganization and hydrogen/deuterium exchange to track changes in local conformational dynamics. The studies revealed unliganded full-length gp120 to be considerably more dynamic, particularly at the CD4 binding site, than suggested by previous studies of the subunit core alone. The large V1/V2 loops, previously unmapped, are positioned to mask the coreceptor binding site in an orientation that recapitulates that observed in the Env trimer. CD4 binding shifts V1/V2 to unmask the coreceptor binding site and triggers profound dynamic changes in gp120 spanning from the binding site to the gp41-interactive face of gp120. These findings provide further insights on the structural basis of Env antigenicity and immunogenicity and of allosteric effects upon receptor binding.

Indexed as

CD4 AntigensGlycoproteinsHIV Envelope Protein gp120Models, MolecularMolecular Dynamics SimulationProtein ConformationScattering, Small AngleCD4 AntigensGlycoproteinsgp120 protein, Human immunodeficiency virus 1HIV Envelope Protein gp120

Identifiers

PMID22674993
PMCPMC3421722

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.