Evidence map›Paper›PMID 22674577›Full record

ArticleThe Journal of biological chemistry2012

Structural mechanism of ATP-induced polymerization of the partition factor ParF: implications for DNA segregation.

Maria A Schumacher, Qiaozhen Ye, Madhuri T Barge, Massimiliano Zampini, Daniela Barillà, Finbarr Hayes

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 35 citations in OpenAlex.

  1. Article
  2. Coordinating plasmid partition with bacterial chromosome segregation.Proceedings of the National Academy of Sciences of the United States of America · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 2 countries.

Maria A SchumacherDepartment of Biochemistry, Duke University School of Medicine, Durham, North Carolina 27710, USA. maria.schumacher@duke.edu
Qiaozhen Ye
Madhuri T Barge
Massimiliano Zampini
Daniela Barillà
Finbarr Hayes
University of Manchester · GBUniversity of York · GBDuke University · USThe University of Texas MD Anderson Cancer Center · US

Funding

Structural studies on the P1 plasmid partition apparatus.R01GM074815 · NIGMS · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI SCHUMACHER, MARIA · 2006 to 2009
$720k
Biotechnology and Biological Sciences Research Council BB/G003114/1Biotechnology and Biological Sciences Research Council G003114Medical Research Council G0801162NIGMS NIH HHS GM074815NIGMS NIH HHS R01 GM074815
6 · The paper itself

Abstract

Segregation of the bacterial multidrug resistance plasmid TP228 requires the centromere-binding protein ParG, the parH centromere, and the Walker box ATPase ParF. The cycling of ParF between ADP- and ATP-bound states drives TP228 partition; ATP binding stimulates ParF polymerization, which is essential for segregation, whereas ADP binding antagonizes polymerization and inhibits DNA partition. The molecular mechanism involved in this adenine nucleotide switch is unclear. Moreover, it is unknown how any Walker box protein polymerizes in an ATP-dependent manner. Here, we describe multiple ParF structures in ADP- and phosphomethylphosphonic acid adenylate ester (AMPPCP)-bound states. ParF-ADP is monomeric but dimerizes when complexed with AMPPCP. Strikingly, in ParF-AMPPCP structures, the dimers interact to create dimer-of-dimer "units" that generate a specific linear filament. Mutation of interface residues prevents both polymerization and DNA segregation in vivo. Thus, these data provide insight into a unique mechanism by which a Walker box protein forms polymers that involves the generation of ATP-induced dimer-of-dimer building blocks.

Indexed as

Adenosine TriphosphatasesAdenosine TriphosphateAmino Acid SequenceBacterial ProteinsBinding SitesConserved SequenceCrystallography, X-RayDNA, BacterialDNA-Binding ProteinsEscherichia coliFluorescence PolarizationMolecular Sequence DataPlasmidsProtein BindingProtein Interaction Domains and MotifsProtein MultimerizationAdenosine TriphosphatasesAdenosine TriphosphateBacterial ProteinsDNA, BacterialDNA-Binding Proteins

Identifiers

PMID22674577
PMCPMC3406698
OpenAlexW2065151943

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.