Evidence map›Paper›PMID 22673571›Full record

ArticleFEBS letters2012

Genomic analysis of ICEVchBan8: An atypical genetic element in Vibrio cholerae.

Elisa Taviani, Matteo Spagnoletti, Daniela Ceccarelli, Bradd J Haley, Nur A Hasan, Arlene Chen, Mauro M Colombo, Anwar Huq, Rita R Colwell

Open access · bronzeAbstract read
In one paragraph

Article in FEBS letters, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.2field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 19 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Elisa TavianiMaryland Pathogen Research Institute, University of Maryland, College Park, MD 20742, USA.
Matteo Spagnoletti
Daniela Ceccarelli
Bradd J Haley
Nur A Hasan
Arlene Chen
Mauro M Colombo
Anwar Huq
Rita R Colwell
University of Maryland, College Park · USSapienza University of Rome · ITJohns Hopkins University · US

Funding

EPIDEMIOLOGY &ECOLOGY OF VIBRIO CHOLERAE IN BANGLADESHR01AI039129 · NIAID · JOHNS HOPKINS UNIVERSITY · PI SACK, DAVID A · 1996 to 2014
$15.2M
NIAID NIH HHS R01 AI039129PHS HHS 1 R01 A139129-01PHS HHS 2R01A1039129-11A2
6 · The paper itself

Abstract

Genomic islands (GIs) and integrative conjugative elements (ICEs) are major players in bacterial evolution since they encode genes involved in adaptive functions of medical or environmental importance. Here we performed the genomic analysis of ICEVchBan8, an unusual ICE found in the genome of a clinical non-toxigenic Vibrio cholerae O37 isolate. ICEVchBan8 shares most of its genetic structure with SXT/R391 ICEs. However, this ICE codes for a different integration/excision module is located at a different insertion site, and part of its genetic cargo shows homology to other pathogenicity islands of V. cholerae.

Indexed as

GenomicsAmino Acid SequenceBacterial ProteinsCholeraGenes, BacterialGenomic IslandsHumansMolecular Sequence DataMultigene FamilyPandemicsVibrio choleraeBacterial Proteins

Identifiers

PMID22673571
PMCPMC3612942
OpenAlexW2082937200

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.