Evidence map›Paper›PMID 22673213›Full record

ArticleMolecular immunology2012

Transcriptional effects of a lupus-associated polymorphism in the 5' untranslated region (UTR) of human complement receptor 2 (CR2/CD21).

Mark N Cruickshank, Mahdad Karimi, Rhonda L Mason, Emily Fenwick, Tim Mercer, Betty P Tsao, Susan A Boackle, Daniela Ulgiati

Abstract read
In one paragraph

Article in Molecular immunology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.3field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 16 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Comparison of the gene expression profiles between gallstones and gallbladder polyps.International journal of clinical and experimental pathology · 2014
    Article
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 2 countries.

Mark N CruickshankBiochemistry and Molecular Biology, School of Chemistry and Biochemistry, The University of Western Australia, Perth, Western Australia, Australia.
Mahdad Karimi
Rhonda L Mason
Emily Fenwick
Tim Mercer
Betty P Tsao
Susan A Boackle
Daniela Ulgiati
University of Western Australia · AUHarry Perkins Institute of Medical Research · AUUniversity of California, Los Angeles · USUniversity of Colorado Denver · US

Funding

Colorado Clinical and Translational Science Institute (UL1)UL1TR000154 · NCATS · UNIVERSITY OF COLORADO DENVER · PI SOKOL, RONALD J. · 2012 to 2013
$20.4M
Functional Analysis of Complement Receptor 2 as a Lupus Susceptibility GeneR01AI070983 · NIAID · UNIVERSITY OF COLORADO DENVER · PI BOACKLE, SUSAN A. · 2006 to 2010
$2.4M
Analysis of Lupus Susceptibility Genes for Treatment and Prevention of DiseaseK24AI078004 · NIAID · UNIVERSITY OF COLORADO DENVER · PI BOACKLE, SUSAN A. · 2010 to 2014
$739k
NCATS NIH HHS UL1 TR000154NIAID NIH HHS K24 AI078004NIAID NIH HHS R01 AI070983
6 · The paper itself

Abstract

Systemic lupus erythematosus (SLE) is a complex autoimmune disease with a strong genetic component that determines risk. A common three single-nucleotide polymorphism (SNP) haplotype of the complement receptor 2 (CR2) gene has been associated with increased risk of SLE (Wu et al., 2007; Douglas et al., 2009), and a less common haplotype consisting of the major allele at SNP1 and minor alleles at SNP2 and 3 confers protection (Douglas et al., 2009). SNP1 (rs3813946), which is located in the 5' untranslated region (UTR) of the CR2 gene, altered transcriptional activity of a CR2 promoter-luciferase reporter gene construct transiently transfected into a B cell line (Wu et al., 2007) and had an independent effect in the protective haplotype (Douglas et al., 2009). In this study, we show that this SNP alters transcriptional activity in a transiently transfected non B-cell line as well as in stably transfected cell lines, supporting its relevance in vivo. Furthermore, the allele at this SNP affects chromatin accessibility of the surrounding sequence and transcription factor binding. These data confirm the effects of rs3813946 on CR2 transcription, identifying the 5' UTR to be a novel regulatory element for the CR2 gene in which variation may alter gene function and modify the development of lupus.

Indexed as

5' Untranslated RegionsPolymorphism, Single NucleotideTranscription, GeneticB-LymphocytesCell Line, TumorGenetic Predisposition to DiseaseHumansLupus Erythematosus, SystemicPromoter Regions, GeneticReceptors, Complement 3d5' Untranslated RegionsReceptors, Complement 3d

Identifiers

PMID22673213
PMCPMC3401243
OpenAlexW1978263027

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.