Evidence map›Paper›PMID 22669417›Full record

ArticleEuropean journal of human genetics : EJHG2013

REGENT: a risk assessment and classification algorithm for genetic and environmental factors.

Daniel J M Crouch, Graham H M Goddard, Cathryn M Lewis

Open access · bronzeAbstract read
In one paragraph

Article in European journal of human genetics : EJHG, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 14 citations in OpenAlex.

  1. Trial
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Daniel J M CrouchDepartment of Medical and Molecular Genetics, King's College London, London, UK.
Graham H M Goddard
Cathryn M Lewis
King's College London · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The identification of environmental and genetic factors that contribute to disease risk requires appropriate statistical methods and software that can integrate different sources of risk, provide statistical assessment of combined risk factors, and facilitate interpretation of this risk. We have developed an R package, REGENT, to calculate risks conferred by genetic factors and multilevel environmental factors. This is performed at a population level, with the option to also analyse individual-level data. REGENT incorporates variability in risk factors to calculate confidence intervals for risk estimates and to classify the population into different categories of risk based on significant differences from the baseline average member of the population. REGENT is an R package available from CRAN: http://cran.r-project.org/web/packages/REGENT. It will be of value to genetic researchers exploring the utility of the variants detected for their disorder, and to clinical researchers interested in genetic risk studies.

Indexed as

AlgorithmsPolymorphism, Single NucleotideRisk AssessmentSoftwareAutophagy-Related ProteinsCarrier ProteinsConfidence IntervalsCrohn DiseaseEnvironmentGene-Environment InteractionHumansNod2 Signaling Adaptor ProteinReceptors, InterleukinATG16L1 protein, humanAutophagy-Related ProteinsCarrier ProteinsIL23R protein, humanNOD2 protein, humanNod2 Signaling Adaptor ProteinReceptors, Interleukin

Identifiers

PMID22669417
PMCPMC3522205
OpenAlexW2024992410

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.