Evidence map›Paper›PMID 22667827›Full record

ArticleThe journal of physical chemistry. B2012

Enhanced sensitivity by nonuniform sampling enables multidimensional MAS NMR spectroscopy of protein assemblies.

Sivakumar Paramasivam, Christopher L Suiter, Guangjin Hou, Shangjin Sun, Melissa Palmer, Jeffrey C Hoch, David Rovnyak, Tatyana Polenova

Abstract read
In one paragraph

Article in The journal of physical chemistry. B, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 53 papers.

0numbers the graph read from it
0cells of the map it votes in
53citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

53 citing papers in PubMed.

  1. Super-Resolution solid-state NMR Spectroscopy.Journal of biomolecular NMR · 2026
    Article
  2. Evaluating metrics of spectral quality in nonuniform sampling.Journal of magnetic resonance open · 2025
    Article
  3. Cross polarization stability in multidimensional NMR spectroscopy of biological solids.Journal of magnetic resonance (San Diego, Calif. : 1997) · 2024
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. High fidelity sampling schedules for NMR spectra of high dynamic range.Journal of magnetic resonance (San Diego, Calif. : 1997) · 2022
    Article
  9. Article
  10. Strategies for RNA Resonance Assignment byFrontiers in molecular biosciences · 2021
    Review
  11. Solid-state NMR spectroscopy.Nature reviews. Methods primers · 2021
    Article
  12. Article
  13. Article
  14. Sensitivity boosts by the CPMAS CryoProbe for challenging biological assemblies.Journal of magnetic resonance (San Diego, Calif. : 1997) · 2020
    Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Sivakumar ParamasivamDepartment of Chemistry and Biochemistry, University of Delaware, Newark, Delaware 19716, USA.
Christopher L Suiter
Guangjin Hou
Shangjin Sun
Melissa Palmer
Jeffrey C Hoch
David Rovnyak
Tatyana Polenova

Funding

X-Ray Core P50GM082251 · NIGMS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI SKOWRONSKI, JACEK · 2007 to 2018
$48.1M
T CELL SPECIFIC TRANSCRIPTION COMPLEXESP01GM047467 · NIGMS · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI WAGNER, GERHARD · 1992 to 2017
$28.6M
COBRE on Membrane Protein Production and CharacterizationP30GM103519 · NIGMS · UNIVERSITY OF DELAWARE · PI LENHOFF, ABRAHAM M · 2012 to 2014
$3.3M
THE ROLE OF MITOCHONDRIAL TRANSPORT PROTEINS IN HEPATOCYTES AND ADIPOCYTESP30RR031160 · NCRR · UNIVERSITY OF DELAWARE · PI POLENOVA, TATYANA · 2010 to 2011
$2.6M
Structure and Dynamics of CAP-GLY: Microtubule Assemblies by Solid-State NMRR01GM085306 · NIGMS · UNIVERSITY OF DELAWARE · PI POLENOVA, TATYANA, WILLIAMS, JOHN CHARLES · 2010 to 2014
$1.4M
Structural Biology of the Catalytic Domain of Bacteriophage T4 PrimaseR15GM084443 · NIGMS · BUCKNELL UNIVERSITY · PI ROVNYAK, DAVID SHERMAN · 2009 to 2009
$206k
NCRR NIH HHS P30 RR031160NCRR NIH HHS P30RR031160NIGMS NIH HHS P01 GM047467NIGMS NIH HHS P01GM47467NIGMS NIH HHS P30 GM103519NIGMS NIH HHS P30GM103519NIGMS NIH HHS P50 GM082251NIGMS NIH HHS P50GM082251NIGMS NIH HHS R01 GM085306NIGMS NIH HHS R01GM085306NIGMS NIH HHS R15 GM084443NIGMS NIH HHS R15GM084443
6 · The paper itself

Abstract

We report dramatic sensitivity enhancements in multidimensional MAS NMR spectra by the use of nonuniform sampling (NUS) and introduce maximum entropy interpolation (MINT) processing that assures the linearity between the time and frequency domains of the NUS acquired data sets. A systematic analysis of sensitivity and resolution in 2D and 3D NUS spectra reveals that with NUS, at least 1.5- to 2-fold sensitivity enhancement can be attained in each indirect dimension without compromising the spectral resolution. These enhancements are similar to or higher than those attained by the newest-generation commercial cryogenic probes. We explore the benefits of this NUS/MaxEnt approach in proteins and protein assemblies using 1-73-(U-(13)C,(15)N)/74-108-(U-(15)N) Escherichia coli thioredoxin reassembly. We demonstrate that in thioredoxin reassembly, NUS permits acquisition of high-quality 3D-NCACX spectra, which are inaccessible with conventional sampling due to prohibitively long experiment times. Of critical importance, issues that hinder NUS-based SNR enhancement in 3D-NMR of liquids are mitigated in the study of solid samples in which theoretical enhancements on the order of 3-4 fold are accessible by compounding the NUS-based SNR enhancement of each indirect dimension. NUS/MINT is anticipated to be widely applicable and advantageous for multidimensional heteronuclear MAS NMR spectroscopy of proteins, protein assemblies, and other biological systems.

Indexed as

Protein MultimerizationEscherichia coliEscherichia coli ProteinsNuclear Magnetic Resonance, BiomolecularThioredoxinsEscherichia coli ProteinsThioredoxins

Identifiers

PMID22667827
PMCPMC3386641

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.