Evidence map›Paper›PMID 22665793›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2012

Tobacco calmodulin-like protein provides secondary defense by binding to and directing degradation of virus RNA silencing suppressors.

Kenji S Nakahara, Chikara Masuta, Syouta Yamada, Hanako Shimura, Yukiko Kashihara, Tomoko S Wada, Ayano Meguro, Kazunori Goto, Kazuki Tadamura, Kae Sueda and 8 more

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 113 papers.

0numbers the graph read from it
0cells of the map it votes in
113citing papers in PubMed
16.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

113 citing papers in PubMed, 233 citations in OpenAlex.

  1. Article
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  3. Review
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  14. Article
  15. Autophagy in plants.Autophagy reports · 2024
    Review
  16. Article
  17. 'Autophagy · 2023
    Article
  18. The Great Game between Plants and Viruses: A Focus on Protein Homeostasis.International journal of molecular sciences · 2023
    Review
  19. Article
  20. Infection Defects of RNA and DNA Viruses Induced by Antiviral RNA Interference.Microbiology and molecular biology reviews : MMBR · 2023
    Review

53 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 3 institutions in 2 countries.

Kenji S NakaharaPlant Breeding Science, Research Faculty of Agriculture, Hokkaido University, Sapporo, 060-8589, Japan. knakahar@res.agr.hokudai.ac.jp
Chikara Masuta
Syouta Yamada
Hanako Shimura
Yukiko Kashihara
Tomoko S Wada
Ayano Meguro
Kazunori Goto
Kazuki Tadamura
Kae Sueda
Toru Sekiguchi
Jun Shao
Noriko Itchoda
Takeshi Matsumura
Manabu Igarashi
Kimihito Ito
Richard W Carthew
Ichiro Uyeda
Hokkaido University · JPNational Institute of Advanced Industrial Science and Technology · JPNorthwestern University · US

Funding

Molecular Mechanisms of Gene Silencing by RNAiR01GM068743 · NIGMS · NORTHWESTERN UNIVERSITY · PI CARTHEW, RICHARD W. · 2003 to 2014
$4.1M
NIGMS NIH HHS GM068743NIGMS NIH HHS R01 GM068743
6 · The paper itself

Abstract

RNA silencing (RNAi) induced by virus-derived double-stranded RNA (dsRNA), which is in a sense regarded as a pathogen-associated molecular pattern (PAMP) of viruses, is a general plant defense mechanism. To counteract this defense, plant viruses express RNA silencing suppressors (RSSs), many of which bind to dsRNA and attenuate RNAi. We showed that the tobacco calmodulin-like protein, rgs-CaM, counterattacked viral RSSs by binding to their dsRNA-binding domains and sequestering them from inhibiting RNAi. Autophagy-like protein degradation seemed to operate to degrade RSSs with the sacrifice of rgs-CaM. These RSSs could thus be regarded as secondary viral PAMPs. This study uncovered a unique defense system in which an rgs-CaM-mediated countermeasure against viral RSSs enhanced host antiviral RNAi in tobacco.

Indexed as

Gene SilencingAutophagyHydrolysisNicotianaProtein BindingRNA InterferenceRNA, ViralRNA VirusesRNA, Viral

Identifiers

PMID22665793
PMCPMC3382489
OpenAlexW2034144108

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.