Evidence map›Paper›PMID 22665573›Full record

ArticleThe Journal of experimental medicine2012

UNG shapes the specificity of AID-induced somatic hypermutation.

Pablo Pérez-Durán, Laura Belver, Virginia G de Yébenes, Pilar Delgado, David G Pisano, Almudena R Ramiro

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of experimental medicine, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 49 citations in OpenAlex.

  1. Article
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  7. The role of HIRA-dependent H3.3 deposition and its modifications in the somatic hypermutation of immunoglobulin variable regions.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  8. Tandem Substitutions in Somatic Hypermutation.Frontiers in immunology · 2021
    Article
  9. Article
  10. Review
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  12. Article
  13. Article
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  15. Article
  16. SAMHD1 enhances immunoglobulin hypermutation by promoting transversion mutation.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  17. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Pablo Pérez-DuránB Cell Biology Laboratory, Centro Nacional de Investigaciones Cardiovasculares (CNIC), 28029 Madrid, Spain.
Laura Belver
Virginia G de Yébenes
Pilar Delgado
David G Pisano
Almudena R Ramiro
Spanish National Centre for Cardiovascular Research · ESSpanish National Cancer Research Centre · ES

Funding

European Research Council 207844
6 · The paper itself

Abstract

Secondary diversification of antibodies through somatic hypermutation (SHM) and class switch recombination (CSR) is a critical component of the immune response. Activation-induced deaminase (AID) initiates both processes by deaminating cytosine residues in immunoglobulin genes. The resulting U:G mismatch can be processed by alternative pathways to give rise to a mutation (SHM) or a DNA double-strand break (CSR). Central to this processing is the activity of uracil-N-glycosylase (UNG), an enzyme normally involved in error-free base excision repair. We used next generation sequencing to analyze the contribution of UNG to the resolution of AID-induced lesions. Loss- and gain-of-function experiments showed that UNG activity can promote both error-prone and high fidelity repair of U:G lesions. Unexpectedly, the balance between these alternative outcomes was influenced by the sequence context of the deaminated cytosine, with individual hotspots exhibiting higher susceptibility to UNG-triggered error-free or error-prone resolution. These results reveal UNG as a new molecular layer that shapes the specificity of AID-induced mutations and may provide new insights into the role of AID in cancer development.

Indexed as

DNA Breaks, Double-StrandedMutationAICDA (Activation-Induced Cytidine Deaminase)AnimalsB-LymphocytesCells, CulturedCytidine DeaminaseDNA Mutational AnalysisDNA RepairFlow CytometryGreen Fluorescent ProteinsHEK293 CellsHumansLuminescent ProteinsMiceMice, KnockoutAICDA (Activation-Induced Cytidine Deaminase)Cytidine Deaminasefluorescent protein 583Green Fluorescent ProteinsLuminescent ProteinsUracil-DNA Glycosidase

Identifiers

PMID22665573
PMCPMC3405504
OpenAlexW2112662100

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.