Evidence map›Paper›PMID 22665475›Full record

ArticleThe Journal of biological chemistry2012

A dual role for receptor-interacting protein kinase 2 (RIP2) kinase activity in nucleotide-binding oligomerization domain 2 (NOD2)-dependent autophagy.

Craig R Homer, Amrita Kabi, Noemí Marina-García, Arun Sreekumar, Alexey I Nesvizhskii, Kourtney P Nickerson, Arul M Chinnaiyan, Gabriel Nuñez, Christine McDonald

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 51 papers.

0numbers the graph read from it
0cells of the map it votes in
51citing papers in PubMed
7.0field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

51 citing papers in PubMed, 89 citations in OpenAlex.

  1. Article
  2. Article
  3. Resolving the field: a role for Nod2 in T cells.Journal of immunology (Baltimore, Md. : 1950) · 2025
    Review
  4. Article
  5. Role and molecular mechanism of NOD2 in chronic non-communicable diseases.Journal of molecular medicine (Berlin, Germany) · 2024
    Review
  6. Review
  7. Article
  8. Article
  9. Review
  10. International journal of molecular sciences · 2022
    Article
  11. Review
  12. Article
  13. Article
  14. Review
  15. Autophagy and microbial pathogenesis.Cell death and differentiation · 2020
    Review
  16. Innate immune receptor NOD2 mediates LGR5Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  17. Review
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 1 country.

Craig R HomerDepartment of Pathobiology, Lerner Research Institute, Cleveland Clinic, Cleveland, Ohio 44195, USA.
Amrita Kabi
Noemí Marina-García
Arun Sreekumar
Alexey I Nesvizhskii
Kourtney P Nickerson
Arul M Chinnaiyan
Gabriel Nuñez
Christine McDonald
Cleveland Clinic Lerner College of Medicine · USUniversity of Michigan–Ann Arbor · USBaylor College of Medicine · USHoward Hughes Medical Institute · US

Funding

CTSA INFRASTRUCTURE FOR PEDIATRIC RESEARCHUL1RR024989 · NCRR · CASE WESTERN RESERVE UNIVERSITY · PI DAVIS, PAMELA B · 2007 to 2011
$53.7M
Clinical and Translational Science Collaborative of ClevelandUL1TR000439 · NCATS · CASE WESTERN RESERVE UNIVERSITY · PI KONSTAN, MICHAEL W. · 2012 to 2016
$50.0M
COMPUTATIONAL TOOLS FOR MASS SPECTROMETRY-BASED INTERACTOME DATAR01GM094231 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Alexey I Nesvizhskii · 2010 to 2026
$5.4M
Nod2: A Susceptibility Gene for Crohn's DiseaseR01DK061707 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI NUNEZ, GABRIEL · 2002 to 2017
$4.7M
Integrative Metabolomics of Prostate Cancer ProgressionR01CA133458 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI SREEKUMAR, ARUN · 2008 to 2012
$1.6M
Autophagy and Nod2 Function in Crohn's DiseaseR01DK082437 · NIDDK · CLEVELAND CLINIC LERNER COM-CWRU · PI MCDONALD, CHRISTINE L · 2009 to 2013
$1.6M
Howard Hughes Medical InstituteNCATS NIH HHS UL1 TR000439NCI NIH HHS R01 CA133458NCRR NIH HHS UL1 RR024989NIDDK NIH HHS R01 DK061707NIDDK NIH HHS R01 DK082437NIDDK NIH HHS R01DK082437NIDDK NIH HHS R01DK61707NIGMS NIH HHS R01 GM094231
6 · The paper itself

Abstract

Autophagy is triggered by the intracellular bacterial sensor NOD2 (nucleotide-binding, oligomerization domain 2) as an anti-bacterial response. Defects in autophagy have been implicated in Crohn's disease susceptibility. The molecular mechanisms of activation and regulation of this process by NOD2 are not well understood, with recent studies reporting conflicting requirements for RIP2 (receptor-interacting protein kinase 2) in autophagy induction. We examined the requirement of NOD2 signaling mediated by RIP2 for anti-bacterial autophagy induction and clearance of Salmonella typhimurium in the intestinal epithelial cell line HCT116. Our data demonstrate that NOD2 stimulates autophagy in a process dependent on RIP2 tyrosine kinase activity. Autophagy induction requires the activity of the mitogen-activated protein kinases MEKK4 and p38 but is independent of NFκB signaling. Activation of autophagy was inhibited by a PP2A phosphatase complex, which interacts with both NOD2 and RIP2. PP2A phosphatase activity inhibited NOD2-dependent autophagy but not activation of NFκB or p38. Upon stimulation of NOD2, the phosphatase activity of the PP2A complex is inhibited through tyrosine phosphorylation of the catalytic subunit in a process dependent on RIP2 activity. These findings demonstrate that RIP2 tyrosine kinase activity is not only required for NOD2-dependent autophagy but plays a dual role in this process. RIP2 both sends a positive autophagy signal through activation of p38 MAPK and relieves repression of autophagy mediated by the phosphatase PP2A.

Indexed as

AutophagyMAP Kinase Signaling SystemEnzyme ActivationEpithelial CellsHEK293 CellsHumansIntestinal MucosaMAP Kinase Kinase Kinase 4NF-kappa BNod2 Signaling Adaptor Proteinp38 Mitogen-Activated Protein KinasesProtein Phosphatase 2Receptor-Interacting Protein Serine-Threonine Kinase 2Salmonella InfectionsSalmonella typhimuriumMAP3K4 protein, humanMAP Kinase Kinase Kinase 4NF-kappa BNOD2 protein, humanNod2 Signaling Adaptor Proteinp38 Mitogen-Activated Protein KinasesProtein Phosphatase 2Receptor-Interacting Protein Serine-Threonine Kinase 2RIPK2 protein, human

Identifiers

PMID22665475
PMCPMC3408141
OpenAlexW1992219661

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.