Evidence map›Paper›PMID 22665138›Full record

SynthesisHuman genetics2012

Large scale international replication and meta-analysis study confirms association of the 15q14 locus with myopia. The CREAM consortium.

Virginie J M Verhoeven, Pirro G Hysi, Seang-Mei Saw, Veronique Vitart, Alireza Mirshahi, Jeremy A Guggenheim, Mary Frances Cotch, Kenji Yamashiro, Paul N Baird, David A Mackey and 85 more

Open access · hybridAbstract readMeta-Analysis
In one paragraph

Synthesis in Human genetics, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers, 8 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed, 8 pooled it
7.0field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed, 8 syntheses or guidelines pooled it, 73 citations in OpenAlex.

  1. Pooled it
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  9. Review
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  11. Bi-Gaussian analysis reveals distinct education-related alterations in spherical equivalent and axial length-results from the Gutenberg Health Study.Graefe's archive for clinical and experimental ophthalmology = Albrecht von Graefes Archiv fur klinische und experimentelle Ophthalmologie · 2024
    Article
  12. Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. The Role of GJD2(Cx36) in Refractive Error Development.Investigative ophthalmology & visual science · 2022
    Review
  18. Phenotypic Consequences of the GJD2 Risk Genotype in Myopia Development.Investigative ophthalmology & visual science · 2021
    Article
  19. Myopia in African Americans Is Significantly Linked to Chromosome 7p15.2-14.2.Investigative ophthalmology & visual science · 2021
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

95 authors at 20 institutions in 13 countries.

Virginie J M VerhoevenDepartment of Ophthalmology, Erasmus Medical Center, 3000 CA Rotterdam, The Netherlands.
Pirro G Hysi
Seang-Mei Saw
Veronique Vitart
Alireza Mirshahi
Jeremy A Guggenheim
Mary Frances Cotch
Kenji Yamashiro
Paul N Baird
David A Mackey
Robert Wojciechowski
M Kamran Ikram
Alex W Hewitt
Priya Duggal
Sarayut Janmahasatian
Chiea-Chuen Khor
Qiao Fan
Xin Zhou
Terri L Young
E-Shyong Tai
Liang-Kee Goh
Yi-Ju Li
Tin Aung
Eranga Vithana
Yik-Ying Teo
Wanting Tay
Xueling Sim
Igor Rudan
Caroline Hayward
Alan F Wright
Ozren Polasek
Harry Campbell
James F Wilson
Brian W Fleck
Isao Nakata
Nagahisa Yoshimura
Ryo Yamada
Fumihiko Matsuda
Kyoko Ohno-Matsui
Abhishek Nag
George McMahon
Beate St Pourcain
Yi Lu
Jugnoo S Rahi
Phillippa M Cumberland
Shomi Bhattacharya
Claire L Simpson
Larry D Atwood
Xiaohui Li
Leslie J Raffel
Federico Murgia
Laura Portas
Dominiek D G Despriet
Leonieke M E van Koolwijk
Christian Wolfram
Karl J Lackner
Anke Tönjes
Reedik Mägi
Terho Lehtimäki
Mika Kähönen
Tõnu Esko
Andres Metspalu
Taina Rantanen
Olavi Pärssinen
Barbara E Klein
Thomas Meitinger
Timothy D Spector
Ben A Oostra
Albert V Smith
Paulus T V M de Jong
Albert Hofman
Najaf Amin
Lennart C Karssen
Fernando Rivadeneira
Johannes R Vingerling
Guðný Eiríksdóttir
Vilmundur Gudnason
Angela Döring
Thomas Bettecken
André G Uitterlinden
Cathy Williams
Tanja Zeller
Raphaële Castagné
Konrad Oexle
Cornelia M van Duijn
Sudha K Iyengar
Paul Mitchell
Jie Jin Wang
René Höhn
Norbert Pfeiffer
Joan E Bailey-Wilson
Dwight Stambolian
Tien-Yin Wong
Christopher J Hammond
Caroline C W Klaver
Erasmus MC · NLKyoto University · JPNational University Health System · SGUniversity of Edinburgh · GBNational University of Singapore · SGJohannes Gutenberg University Mainz · DENational Institutes of Health · USUniversity of Bristol · GBUniversity of Melbourne · AUCase Western Reserve University · USCedars-Sinai Medical Center · USKing's College London · GBMedical Research Council · GBNational Research Council · ITSingapore Eye Research Institute · SGSt Thomas' Hospital · GBTechnical University of Munich · DEUniversity College London · GBUniversity Medical Center of the Johannes Gutenberg University Mainz · DEUniversity of Iceland · IS

Funding

ZONA-FREE HAMSTER OVA ASSAY AS AN INDICATOR OF MALE FERTILITYM01RR000425 · NCRR · LUNDQUIST INSTITUTE FOR BIOMEDICAL INNOVATION AT HARBOR-UCLA MEDICAL CENTER · PI ANDERSON, GAIL V · 1985 to 2011
$74.2M
UCLA Clinical and Translational Science InstituteUL1TR000124 · NCATS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI DUBINETT, STEVEN M. · 2012 to 2015
$57.0M
CTSA INFRASTRUCTURE FOR PEDIATRIC RESEARCHUL1RR024156 · NCRR · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI GINSBERG, HENRY N · 2006 to 2011
$53.0M
UCLA CLINICAL AND TRANSLATIONAL SCIENCE INSTITUTEUL1RR033176 · NCRR · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI DUBINETT, STEVEN M. · 2011 to 2011
$15.5M
Genetic Epidemiology of Complex TraitsZIAHG200327 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI BAILEY-WILSON, JOAN ELLEN · 2009 to 2022
$10.5M
Multi-Ethnic Study of Atherosclerosis (MESA) StudyR01HL071205 · NHLBI · CEDARS-SINAI MEDICAL CENTER · PI ROTTER, JEROME I · 2003 to 2007
$10.4M
The Molecular Genetics of High MyopiaR01EY014685 · NEI · UNIVERSITY OF WISCONSIN-MADISON · PI YOUNG, TERRI LOIS · 2003 to 2017
$8.1M
CLINICAL PROJECT: Age, Gene/Environment Susceptibility Study on the Multi-omics of Aging: A clinical epidemiologic prospective studyZIAAG007380 · NIA · NATIONAL INSTITUTE ON AGING · PI LAUNER, LENORE J · 2009 to 2025
$6.1M
A Multi-Center Study To Map Genes for Fuchs'DystrophyR01EY016482 · NEI · CASE WESTERN RESERVE UNIVERSITY · PI IYENGAR, SUDHA K · 2005 to 2009
$3.8M
Age, Gene/environment Susceptibility Study In Iceland - Ocular ComponentZIAEY000401 · NEI · NATIONAL EYE INSTITUTE · PI COTCH, MARY FRANCES · 2009 to 2020
$3.3M
Genetic Epidemiology of Refractive ErrorR01EY020483 · NEI · UNIVERSITY OF PENNSYLVANIA · PI STAMBOLIAN, DWIGHT EDWARD · 2010 to 2014
$2.9M
International Collaborative Twin Study of Refractive and Glaucoma EndophenotypesR01EY018246 · NEI · DUKE UNIVERSITY · PI YOUNG, TERRI LOIS · 2007 to 2009
$1.8M
Chief Scientist Office CZB/4/438Chief Scientist Office CZB/4/710Department of Health CDF-2009-02-35Intramural NIH HHS Z01 EY000403Intramural NIH HHS Z01 EY000405Intramural NIH HHS Z99 EY999999Intramural NIH HHS ZIA AG007380Intramural NIH HHS ZIA EY000401Intramural NIH HHS ZIA EY000403Intramural NIH HHS ZIA EY000405Medical Research Council 4882Medical Research Council G0400546Medical Research Council G9815508Medical Research Council MC_PC_U127561128Medical Research Council MC_U127561128NCATS NIH HHS UL1 TR000124NCRR NIH HHS M01 RR000425NCRR NIH HHS RR00425NCRR NIH HHS RR-024156NCRR NIH HHS UL1 RR024156NCRR NIH HHS UL1 RR033176NCRR NIH HHS UL1RR033176NEI NIH HHS 1R01EY018246NEI NIH HHS K08 EY022943NEI NIH HHS N01EY22112NEI NIH HHS N01EY92109NEI NIH HHS R01 EY014685NEI NIH HHS R01 EY016482NEI NIH HHS R01 EY018246NEI NIH HHS R01EY01824601NEI NIH HHS R01 EY020483NEI NIH HHS R01 EY023196NHLBI NIH HHS N01 HC025195NHLBI NIH HHS N01 HC095159NHLBI NIH HHS N01 HC095169NHLBI NIH HHS N02 HL064278NHLBI NIH HHS R01 HL071205NHLBI NIH HHS R01HL071205NIA NIH HHS N01 AG012100Wellcome Trust 076467Wellcome Trust 083478Wellcome Trust 092731
6 · The paper itself

Abstract

Myopia is a complex genetic disorder and a common cause of visual impairment among working age adults. Genome-wide association studies have identified susceptibility loci on chromosomes 15q14 and 15q25 in Caucasian populations of European ancestry. Here, we present a confirmation and meta-analysis study in which we assessed whether these two loci are also associated with myopia in other populations. The study population comprised 31 cohorts from the Consortium of Refractive Error and Myopia (CREAM) representing 4 different continents with 55,177 individuals; 42,845 Caucasians and 12,332 Asians. We performed a meta-analysis of 14 single nucleotide polymorphisms (SNPs) on 15q14 and 5 SNPs on 15q25 using linear regression analysis with spherical equivalent as a quantitative outcome, adjusted for age and sex. We calculated the odds ratio (OR) of myopia versus hyperopia for carriers of the top-SNP alleles using a fixed effects meta-analysis. At locus 15q14, all SNPs were significantly replicated, with the lowest P value 3.87 × 10(-12) for SNP rs634990 in Caucasians, and 9.65 × 10(-4) for rs8032019 in Asians. The overall meta-analysis provided P value 9.20 × 10(-23) for the top SNP rs634990. The risk of myopia versus hyperopia was OR 1.88 (95 % CI 1.64, 2.16, P < 0.001) for homozygous carriers of the risk allele at the top SNP rs634990, and OR 1.33 (95 % CI 1.19, 1.49, P < 0.001) for heterozygous carriers. SNPs at locus 15q25 did not replicate significantly (P value 5.81 × 10(-2) for top SNP rs939661). We conclude that common variants at chromosome 15q14 influence susceptibility for myopia in Caucasian and Asian populations world-wide.

Indexed as

Chromosomes, Human, Pair 15AllelesHumansMyopiaPhenotypePolymorphism, Single Nucleotide

Identifiers

PMID22665138
PMCPMC3418496
OpenAlexW2147483304

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.