Evidence map›Paper›PMID 22664167›Full record

ArticleThe Journal of allergy and clinical immunology2012

Alternaria alternata allergen Alt a 1: a unique β-barrel protein dimer found exclusively in fungi.

Maksymilian Chruszcz, Martin D Chapman, Tomasz Osinski, Robert Solberg, Matthew Demas, Przemyslaw J Porebski, Karolina A Majorek, Anna Pomés, Wladek Minor

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of allergy and clinical immunology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 54 papers.

0numbers the graph read from it
0cells of the map it votes in
54citing papers in PubMed
4.5field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

54 citing papers in PubMed, 125 citations in OpenAlex.

  1. Article
  2. Review
  3. Transcriptomic profiling of wheat (Frontiers in plant science · 2026
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  11. Allergen-induced DNA release by the airway epithelium amplifies type 2 immunity.The Journal of allergy and clinical immunology · 2023
    Article
  12. Article
  13. Human Monoclonal IgE Antibodies-a Major Milestone in Allergy.Current allergy and asthma reports · 2023
    Review
  14. Impact of oligomerization on the allergenicity of allergens.Clinical and molecular allergy : CMA · 2022
    Review
  15. Fungal Allergen and Mold Allergy Diagnosis: Role and Relevance ofJournal of fungi (Basel, Switzerland) · 2022
    Review
  16. Article
  17. Article
  18. Alt a 1 Promotes Allergic AsthmaFrontiers in immunology · 2022
    Article
  19. Identification and genetic diversity ofInternational journal of molecular epidemiology and genetics · 2022
    Article
  20. Journal of fungi (Basel, Switzerland) · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Maksymilian ChruszczDepartment of Molecular Physiology and Biological Physics, University of Virginia, Charlottesville, VA 22908, USA. maks@iwonka.med.virginia.edu
Martin D Chapman
Tomasz Osinski
Robert Solberg
Matthew Demas
Przemyslaw J Porebski
Karolina A Majorek
Anna Pomés
Wladek Minor
University of Virginia · USIndoor Biotechnologies (United States) · US

Funding

Antigenic determinants of asthma-associated allergens for design of immunotherapy.R01AI077653 · NIAID · INDOOR BIOTECHNOLOGIES · PI MARTIN D. CHAPMAN, Maksymilian Chruszcz · 2009 to 2026
$9.5M
X-RAY CRYSTALLOGRAPHY OF MACROMOLECULESR01GM053163 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI MINOR, WLADEK, OTWINOWSKI, ZBYSZEK · 1996 to 2014
$6.3M
NIAID NIH HHS R01 AI077653NIAID NIH HHS R01AI077653NIGMS NIH HHS GM53163NIGMS NIH HHS R01 GM053163
6 · The paper itself

Abstract

backgroundAlternaria species is one of the most common molds associated with allergic diseases, and 80% of Alternaria species-sensitive patients produce IgE antibodies to a major protein allergen, Alt a 1. The structure and function of Alt a 1 is unknown.

objectiveWe sought to obtain a high-resolution structure of Alt a 1 using x-ray crystallography and to investigate structural relationships between Alt a 1 and other allergens and proteins reported in the Protein Data Bank.

methodsX-ray crystallography was used to determine the structure of Alt a 1 by using a custom-designed set of crystallization conditions. An initial Alt a 1 model was determined by the application of a Ta(6)Br(12)(2+) cluster and single-wavelength anomalous diffraction. Bioinformatic analyses were used to compare the Alt a 1 sequence and structure with that of other proteins.

resultsAlt a 1 is a unique β-barrel comprising 11 β-strands and forms a "butterfly-like" dimer linked by a single disulfide bond with a large (1345 Å(2)) dimer interface. Intramolecular disulfide bonds are conserved among Alt a 1 homologs. Currently, the Alt a 1 structure has no equivalent in the Protein Data Bank. Bioinformatics analyses suggest that the structure is found exclusively in fungi. Four previously reported putative IgE-binding peptides have been located on the Alt a 1 structure.

conclusionsAlt a 1 has a unique, dimeric β-barrel structure that appears to define a new protein family with unknown function found exclusively in fungi. The location of IgE antibody-binding epitopes is in agreement with the structural analysis of Alt a 1. The Alt a 1 structure will allow mechanistic structure/function studies and immunologic studies directed toward new forms of immunotherapy for Alternaria species-sensitive allergic patients.

Indexed as

AdultAllergensAlternariaAmino Acid SequenceChildComputational BiologyCrystallography, X-RayDimerizationEpitopesFungal ProteinsHumansImmunoglobulin EModels, MolecularSequence AlignmentAllergensALTA1 protein, Alternaria alternataEpitopesFungal ProteinsImmunoglobulin E

Identifiers

PMID22664167
PMCPMC3391610
OpenAlexW1971323492

What OpenQuestion holds

Textmetadata
LicenceTDM
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.