Evidence map›Paper›PMID 22663564›Full record

ArticleJournal of proteome research2012

Proteomic analysis of bronchoalveolar lavage fluid proteins from mice infected with Francisella tularensis ssp. novicida.

Susan M Varnum, Bobbie-Jo M Webb-Robertson, Joel G Pounds, Ronald J Moore, Richard D Smith, Charles W Frevert, Shawn J Skerrett, David Wunschel

Open access · greenAbstract readComparative Study
In one paragraph

Article in Journal of proteome research, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.5field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 8 citations in OpenAlex.

  1. Loss of SP-A in the Lung Exacerbates Pulmonary Fibrosis.International journal of molecular sciences · 2022
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Susan M VarnumBiological Science Division, Pacific Northwest National Laboratory, Richland, Washington 99354, USA. susan.varnum@pnnl.gov
Bobbie-Jo M Webb-Robertson
Joel G Pounds
Ronald J Moore
Richard D Smith
Charles W Frevert
Shawn J Skerrett
David Wunschel
Pacific Northwest National Laboratory · USUniversity of Washington · US

Funding

Variation in Human Innate ImmunityU54AI057141 · NIAID · UNIVERSITY OF WASHINGTON · PI MOUGOUS, JOSEPH DAVID · 2003 to 2013
$102.3M
WORKSHOP AND TRAINING ACTIVITIESP41RR018522 · NCRR · BATTELLE PACIFIC NORTHWEST LABORATORIES · PI SMITH, RICHARD D · 2003 to 2011
$25.1M
Thymic Stromal Lymphopoietin (TSLP) and Lung Inflammation and ImmP01HL098067 · NHLBI · BENAROYA RESEARCH INST AT VIRGINIA MASON · PI FREVERT, CHARLES WAYNE · 2010 to 2014
$13.5M
Gene-targeted mouse models to study the function of versicanR21RR030249 · NCRR · UNIVERSITY OF WASHINGTON · PI FREVERT, CHARLES WAYNE · 2010 to 2011
$388k
NCRR NIH HHS P41 RR018522NCRR NIH HHS R21 RR030249NCRR NIH HHS RR030249NCRR NIH HHS RR18522NHLBI NIH HHS HL098067NHLBI NIH HHS P01 HL098067NIAID NIH HHS 3U54AI057141NIAID NIH HHS U54 AI057141
6 · The paper itself

Abstract

Francisella tularensis causes the zoonosis tularemia in humans and is one of the most virulent bacterial pathogens. We utilized a global proteomic approach to characterize protein changes in bronchoalveolar lavage fluid from mice exposed to one of three organisms, F. tularensis ssp. novicida, an avirulent mutant of F. tularensis ssp. novicida (F.t. novicida-ΔmglA), and Pseudomonas aeruginosa. The composition of bronchoalveolar lavage fluid (BALF) proteins was altered following infection, including proteins involved in neutrophil activation, oxidative stress, and inflammatory responses. Components of the innate immune response were induced including the acute phase response and the complement system; however, the timing of their induction varied. F. tularensis ssp. novicida infected mice do not appear to have an effective innate immune response in the first hours of infection; however, within 24 h, they show an upregulation of innate immune response proteins. This delayed response is in contrast to P. aeruginosa infected animals which show an early innate immune response. Likewise, F.t. novicida-ΔmglA infection initiates an early innate immune response; however, this response is diminished by 24 h. Finally, this study identifies several candidate biomarkers, including Chitinase 3-like-1 (CHI3L1 or YKL-40) and peroxiredoxin 1, that are associated with F. tularensis ssp. novicida but not P. aeruginosa infection.

Indexed as

Acute-Phase ProteinsAnimalsBronchoalveolar Lavage FluidComplement System ProteinsFrancisella tularensisImmunity, InnateMaleMiceMice, Inbred C57BLNeutrophilsOxidative StressProteomeProteomicsPseudomonas aeruginosaPseudomonas InfectionsTularemiaAcute-Phase ProteinsComplement System ProteinsProteome

Identifiers

PMID22663564
PMCPMC3423085
OpenAlexW2086616171

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.