Evidence map›Paper›PMID 22661715›Full record

ArticleThe Journal of biological chemistry2012

Trypanosoma brucei 20 S editosomes have one RNA substrate-binding site and execute RNA unwinding activity.

Cordula Böhm, Venkata Subbaraju Katari, Michael Brecht, H Ulrich Göringer

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.2field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 16 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Cordula BöhmDepartment of Molecular Genetics, Darmstadt University of Technology, 64287 Darmstadt, Germany.
Venkata Subbaraju Katari
Michael Brecht
H Ulrich Göringer
Technical University of Darmstadt · DE

Funding

Howard Hughes Medical Institute
6 · The paper itself

Abstract

Editing of mitochondrial pre-mRNAs in African trypanosomes generates full-length transcripts by the site-specific insertion and deletion of uridylate nucleotides. The reaction is catalyzed by a 0.8 MDa multienzyme complex, the editosome. Although the binding of substrate pre-edited mRNAs and cognate guide RNAs (gRNAs) represents the first step in the reaction cycle, the biochemical and biophysical details of the editosome/RNA interaction are not understood. Here we show that editosomes bind full-length substrate mRNAs with nanomolar affinity in a nonselective fashion. The complexes do not discriminate-neither kinetically nor thermodynamically-between different mitochondrial pre-mRNAs or between edited and unedited versions of the same transcript. They also bind gRNAs and gRNA/pre-mRNA hybrid RNAs with similar affinities and association rate constants. Gold labeling of editosome-bound RNA in combination with transmission electron microscopy identified a single RNA-binding site per editosome. However, atomic force microscopy of individual pre-mRNA-editosome complexes revealed that multiple editosomes can interact with one pre-mRNA. Lastly, we demonstrate a so far unknown activity of the editing machinery: editosome-bound RNA becomes unfolded by a chaperone-type RNA unwinding activity.

Indexed as

Binding SitesMacromolecular SubstancesMicroscopy, Atomic ForceMicroscopy, Electron, TransmissionNucleic Acid ConformationProtein BindingProtozoan ProteinsRNA-Binding ProteinsRNA, Guide, KinetoplastidaRNA, MessengerRNA, MitochondrialRNA Processing, Post-TranscriptionalRNA, ProtozoanSurface Plasmon ResonanceTrypanosoma brucei bruceiMacromolecular Substancesmitochondrial messenger RNAProtozoan ProteinsRNA-Binding ProteinsRNA, Guide, KinetoplastidaRNA, MessengerRNA, MitochondrialRNA, Protozoan

Identifiers

PMID22661715
PMCPMC3406711
OpenAlexW2000500223

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.