Evidence map›Paper›PMID 22661687›Full record

ArticleJournal of bacteriology2012

YqjD is an inner membrane protein associated with stationary-phase ribosomes in Escherichia coli.

Hideji Yoshida, Yasushi Maki, Shou Furuike, Akiko Sakai, Masami Ueta, Akira Wada

Open access · bronzeAbstract read
In one paragraph

Article in Journal of bacteriology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
0.9field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 43 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Hibernating ribosomes as drug targets?Frontiers in microbiology · 2024
    Review
  6. Article
  7. Article
  8. Cell Envelope Stress Response in Pseudomonas aeruginosa.Advances in experimental medicine and biology · 2022
    Article
  9. Review
  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. The bacterial translation stress response.FEMS microbiology reviews · 2014
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Hideji YoshidaDepartment of Physics, Osaka Medical College, Takatsuki, Osaka, Japan. yhide@art.osaka-med.ac.jp
Yasushi Maki
Shou Furuike
Akiko Sakai
Masami Ueta
Akira Wada
Osaka Medical and Pharmaceutical University · JPYoshida Biological Laboratry · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Here, we provide evidence that YqjD, a hypothetical protein of Escherichia coli, is an inner membrane and ribosome binding protein. This protein is expressed during the stationary growth phase, and expression is regulated by stress response sigma factor RpoS. YqjD possesses a transmembrane motif in the C-terminal region and associates with 70S and 100S ribosomes at the N-terminal region. Interestingly, E. coli possesses two paralogous proteins of YqjD, ElaB and YgaM, which are expressed and bind to ribosomes in a similar manner to YqjD. Overexpression of YqjD leads to inhibition of cell growth. It has been suggested that YqjD loses ribosomal activity and localizes ribosomes to the membrane during the stationary phase.

Indexed as

Bacterial ProteinsEscherichia coliEscherichia coli ProteinsGene Expression Regulation, BacterialMembrane ProteinsProtein BindingProtein Interaction MappingRibosomesSigma FactorBacterial ProteinsEscherichia coli Proteinsinner membrane protein, E coliMembrane ProteinsSigma Factorsigma factor KatF protein, Bacteria

Identifiers

PMID22661687
PMCPMC3416271
OpenAlexW2090778722

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.