Evidence map›Paper›PMID 22661445›Full record

ArticleCold Spring Harbor protocols2012

Construction of flow chambers for polarized total internal reflection fluorescence microscopy (polTIRFM) motility assays.

John F Beausang, Yujie Sun, Margot E Quinlan, Joseph N Forkey, Yale E Goldman

Open access · bronzeAbstract read
In one paragraph

Article in Cold Spring Harbor protocols, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 3 citations in OpenAlex.

  1. Angular measurements of the dynein ring reveal a stepping mechanism dependent on a flexible stalk.Proceedings of the National Academy of Sciences of the United States of America · 2017
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

John F Beausang
Yujie Sun
Margot E Quinlan
Joseph N Forkey
Yale E Goldman

Funding

Regulation and Mechano-Chemistry of Myosins V and VIP01AR051174 · NIAMS · UNIVERSITY OF PENNSYLVANIA · PI HOLZBAUR, ERIKA L · 2004 to 2008
$7.1M
StructuraL Dynamics of Actomyosin MotilityR01GM086352 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI GOLDMAN, YALE E · 2008 to 2016
$3.8M
STRUCTURAL DYNAMICS OF ACTOMYOSIN MOTILITYR01AR026846 · NIAMS · UNIVERSITY OF PENNSYLVANIA · PI GOLDMAN, YALE E · 1986 to 2007
$2.3M
KINETICS OF THE MUSCLE CONTRACTILE APPARATUSR37AR026846 · NIAMS · UNIVERSITY OF PENNSYLVANIA · PI GOLDMAN, YALE E · 1992 to 2001
$536k
NIAMS NIH HHS AR26846NIAMS NIH HHS AR51174NIAMS NIH HHS P01 AR051174NIAMS NIH HHS R01 AR026846NIAMS NIH HHS R37 AR026846NIGMS NIH HHS R01 GM086352
6 · The paper itself

Abstract

Polarized total internal reflection fluorescence microscopy (polTIRFM) can be used to detect the spatial orientation and rotational dynamics of single molecules. polTIRFM determines the three-dimensional angular orientation and the extent of wobble of a fluorescent probe bound to the macromolecule of interest. This protocol describes how to construct sample chambers (flow chambers) for polTIRFM motility assays. Each chamber can hold ∼20 µL of solution. To flow a solution through the chamber, the solution is added to the chamber with a pipette while wicking out the previous contents with filter paper. Each end of the coverslip should extend beyond the edge of the slide to support the pipette tip and filter paper. The flow rate can be roughly controlled by adjusting the contact area between the filter paper and the solution. The chambers can be used for investigating the motility of myosin V in vitro with the processive motility assay, as well as for assessing the motility of actin using the twirling assay.

Indexed as

ActinsFluorescent DyesMacromolecular SubstancesMicroscopy, FluorescenceMicroscopy, PolarizationMuscle Fibers, SkeletalMyosin Type VActinsFluorescent DyesMacromolecular SubstancesMyosin Type V

Identifiers

PMID22661445
PMCPMC3855857
OpenAlexW2083638609

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.