Evidence map›Paper›PMID 22660718›Full record

ArticleApplied and environmental microbiology2012

Exploiting a natural auxotrophy for genetic selection.

Elizabeth Ramage, Larry Gallagher, Colin Manoil

Abstract read
In one paragraph

Article in Applied and environmental microbiology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Elizabeth RamageDepartment of Genome Sciences, University of Washington, Seattle, Washington, USA.
Larry Gallagher
Colin Manoil

Funding

Variation in Human Innate ImmunityU54AI057141 · NIAID · UNIVERSITY OF WASHINGTON · PI MOUGOUS, JOSEPH DAVID · 2003 to 2013
$102.3M
Alternatives to antibiotic resistance selective markers for Francisella R21AI074609 · NIAID · UNIVERSITY OF WASHINGTON · PI MANOIL, COLIN · 2007 to 2008
$420k
NIAID NIH HHS R21 AI074609NIAID NIH HHS R21AI074609NIAID NIH HHS U54 AI057141NIAID NIH HHS U54AI057141
6 · The paper itself

Abstract

We exploited the natural histidine auxotrophy of Francisella species to develop hisD (encodes histidinol dehydrogenase) as a positive selection marker. A shuttle plasmid (pBR103) carrying Escherichia coli hisD and designed for cloning of PCR fragments replicated in both attenuated and highly virulent Francisella strains. During this work, we formulated a simplified defined growth medium for Francisella novicida.

Indexed as

Selection, GeneticAlcohol OxidoreductasesCulture MediaDNA, BacterialEscherichia coliFrancisellaGenetic EngineeringGenetics, MicrobialGenetic VectorsHistidineMolecular Sequence DataPlasmidsSequence Analysis, DNAAlcohol OxidoreductasesCulture MediaDNA, BacterialHistidinehistidinol dehydrogenase

Identifiers

PMID22660718
PMCPMC3406110

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.