Evidence map›Paper›PMID 22660703›Full record

ArticleApplied and environmental microbiology2012

Involvement of RpoN in regulating bacterial arsenite oxidation.

Yoon-Suk Kang, Brian Bothner, Christopher Rensing, Timothy R McDermott

Open access · bronzeAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
4.2field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 36 citations in OpenAlex.

  1. Article
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  5. Review
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  7. Review
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  11. Arsenite oxidase also functions as an antimonite oxidase.Applied and environmental microbiology · 2015
    Article
  12. Article
  13. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Yoon-Suk KangDepartment of Land Resources and Environmental Sciences, and Thermal Biology Institute, Montana State University, Bozeman, Montana, USA.
Brian Bothner
Christopher Rensing
Timothy R McDermott
Montana State University · USResearch Triangle Park Foundation · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In this study with the model organism Agrobacterium tumefaciens, we used a combination of lacZ gene fusions, reverse transcriptase PCR (RT-PCR), and deletion and insertional inactivation mutations to show unambiguously that the alternative sigma factor RpoN participates in the regulation of As(III) oxidation. A deletion mutation that removed the RpoN binding site from the aioBA promoter and an aacC3 (gentamicin resistance) cassette insertional inactivation of the rpoN coding region eliminated aioBA expression and As(III) oxidation, although rpoN expression was not related to cell exposure to As(III). Putative RpoN binding sites were identified throughout the genome and, as examples, included promoters for aioB, phoB1, pstS1, dctA, glnA, glnB, and flgB that were examined by using qualitative RT-PCR and lacZ reporter fusions to assess the relative contribution of RpoN to their transcription. The expressions of aioB and dctA in the wild-type strain were considerably enhanced in cells exposed to As(III), and both genes were silent in the rpoN::aacC3 mutant regardless of As(III). The expression level of glnA was not influenced by As(III) but was reduced (but not silent) in the rpoN::aacC3 mutant and further reduced in the mutant under N starvation conditions. The rpoN::aacC3 mutation had no obvious effect on the expression of glnB, pstS1, phoB1, or flgB. These experiments provide definitive evidence to document the requirement of RpoN for As(III) oxidation but also illustrate that the presence of a consensus RpoN binding site does not necessarily link the associated gene with regulation by As(III) or by this sigma factor.

Indexed as

Agrobacterium tumefaciensArsenitesArtificial Gene Fusionbeta-GalactosidaseBinding SitesDNA, BacterialGene DeletionGene Expression ProfilingGenes, ReporterMutagenesis, InsertionalOxidation-ReductionReverse Transcriptase Polymerase Chain ReactionSigma FactorarseniteArsenitesbeta-GalactosidaseDNA, BacterialSigma Factor

Identifiers

PMID22660703
PMCPMC3406167
OpenAlexW2111911017

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.