Evidence map›Paper›PMID 22660414›Full record

ArticleNature cell biology2012

Genome-wide RNAi screening identifies human proteins with a regulatory function in the early secretory pathway.

Jeremy C Simpson, Brigitte Joggerst, Vibor Laketa, Fatima Verissimo, Cihan Cetin, Holger Erfle, Mariana G Bexiga, Vasanth R Singan, Jean-Karim Hériché, Beate Neumann and 7 more

Abstract read
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In one paragraph

Article in Nature cell biology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 100 papers.

0numbers the graph read from it
0cells of the map it votes in
100citing papers in PubMed
9.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

100 citing papers in PubMed, 187 citations in OpenAlex.

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  13. ER exit in physiology and disease.Frontiers in molecular biosciences · 2024
    Review
  14. Article
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  20. Article

40 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 5 institutions in 3 countries.

Jeremy C SimpsonSchool of Biology and Environmental Science & Conway Institute of Biomolecular and Biomedical Research, University College Dublin, Dublin 4, Ireland. jeremy.simpson@ucd.ie
Brigitte Joggerst
Vibor Laketa
Fatima Verissimo
Cihan Cetin
Holger Erfle
Mariana G Bexiga
Vasanth R Singan
Jean-Karim Hériché
Beate Neumann
Alvaro Mateos
Jonathon Blake
Stephanie Bechtel
Vladimir Benes
Stefan Wiemann
Jan Ellenberg
Rainer Pepperkok
European Molecular Biology Laboratory · DEEuropean Molecular Biology Organization · DEUniversity College Dublin · IEGenomics (United Kingdom) · GBHeidelberg University · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The secretory pathway in mammalian cells has evolved to facilitate the transfer of cargo molecules to internal and cell surface membranes. Use of automated microscopy-based genome-wide RNA interference screens in cultured human cells allowed us to identify 554 proteins influencing secretion. Cloning, fluorescent-tagging and subcellular localization analysis of 179 of these proteins revealed that more than two-thirds localize to either the cytoplasm or membranes of the secretory and endocytic pathways. The depletion of 143 of them resulted in perturbations in the organization of the COPII and/or COPI vesicular coat complexes of the early secretory pathway, or the morphology of the Golgi complex. Network analyses revealed a so far unappreciated link between early secretory pathway function, small GTP-binding protein regulation, actin cytoskeleton organization and EGF-receptor-mediated signalling. This work provides an important resource for an integrative understanding of global cellular organization and regulation of the secretory pathway in mammalian cells.

Indexed as

Gene Regulatory NetworksRNA InterferenceActin CytoskeletonCloning, MolecularEndocytosisEpidermal Growth FactorGene Expression RegulationGolgi ApparatusHeLa CellsHumansMicroscopy, FluorescenceMonomeric GTP-Binding ProteinsPlatelet-Derived Growth FactorProtein TransportRecombinant Fusion ProteinsSecretory VesiclesEpidermal Growth FactorMonomeric GTP-Binding ProteinsPlatelet-Derived Growth FactorRecombinant Fusion Proteins

Identifiers

PMID22660414
OpenAlexW2080751376

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.