Evidence map›Paper›PMID 22658748›Full record

ArticleStructure (London, England : 1993)2012

Crystal structures of the outer membrane domain of intimin and invasin from enterohemorrhagic E. coli and enteropathogenic Y. pseudotuberculosis.

James W Fairman, Nathalie Dautin, Damian Wojtowicz, Wei Liu, Nicholas Noinaj, Travis J Barnard, Eshwar Udho, Teresa M Przytycka, Vadim Cherezov, Susan K Buchanan

Open access · bronzeAbstract read
In one paragraph

Article in Structure (London, England : 1993), 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 50 papers.

0numbers the graph read from it
0cells of the map it votes in
50citing papers in PubMed
6.7field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

50 citing papers in PubMed, 95 citations in OpenAlex.

  1. Article
  2. Article
  3. Development and utilization ofbioRxiv : the preprint server for biology · 2024
    Article
  4. Immunodominant extracellular loops ofbioRxiv : the preprint server for biology · 2024
    Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Engineering Tropism ofACS synthetic biology · 2021
    Article
  12. Article
  13. Review
  14. Article
  15. Article
  16. Review
  17. Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 1 country.

James W FairmanNational Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, Bethesda, MD 20892, USA.
Nathalie Dautin
Damian Wojtowicz
Wei Liu
Nicholas Noinaj
Travis J Barnard
Eshwar Udho
Teresa M Przytycka
Vadim Cherezov
Susan K Buchanan
National Institutes of Health · USScripps Research Institute · USAlbert Einstein College of Medicine · USUniversity of America · US

Funding

JCSG Center:Innovative Membrane Protein Technology (RMI)P50GM073197 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI STEVENS, RAYMOND C · 2004 to 2013
$26.8M
Combinatorial and graph theoretical approach to systems biology and mol. evo.ZIALM200887 · NLM · NATIONAL LIBRARY OF MEDICINE · PI PRZYTYCKA, TERESA · 2009 to 2025
$24.4M
structural characterization of bacterial secretion channelsZIADK036139 · NIDDK · NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE AND KIDNEY DISEASES · PI BUCHANAN, SUSAN · 2009 to 2025
$19.3M
Structural characterization of outer membrane proteins from Yersinia pestisZIADK011011 · NIDDK · NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE AND KIDNEY DISEASES · PI BUCHANAN, SUSAN · 2009 to 2025
$19.1M
MOLECULAR BIOPHYSICS TRAINING GRANTT32GM008572 · NIGMS · YESHIVA UNIVERSITY · PI BRENOWITZ, MICHAEL D. · 1995 to 2009
$3.0M
Intramural NIH HHS ZIA DK036139NCI NIH HHS Y1-CO-1020NIGMS NIH HHS GM008572NIGMS NIH HHS P50 GM073197NIGMS NIH HHS T32 GM008572NIGMS NIH HHS Y1-GM-1104
6 · The paper itself

Abstract

Intimins and invasins are virulence factors produced by pathogenic Gram-negative bacteria. They contain C-terminal extracellular passenger domains that are involved in adhesion to host cells and N-terminal β domains that are embedded in the outer membrane. Here, we identify the domain boundaries of an E. coli intimin β domain and use this information to solve its structure and the β domain structure of a Y. pseudotuberculosis invasin. Both β domain structures crystallized as monomers and reveal that the previous range of residues assigned to the β domain also includes a protease-resistant domain that is part of the passenger. Additionally, we identify 146 nonredundant representative members of the intimin/invasin family based on the boundaries of the highly conserved intimin and invasin β domains. We then use this set of sequences along with our structural data to find and map the evolutionarily constrained residues within the β domain.

Indexed as

Adhesins, BacterialAmino Acid SequenceBacterial AdhesionConserved SequenceCrystallography, X-RayEnterohemorrhagic Escherichia coliEscherichia coli ProteinsEvolution, MolecularModels, MolecularMolecular Sequence DataPlasmidsProtein Structure, SecondaryProtein Structure, TertiaryRecombinant Fusion ProteinsVirulence FactorsYersinia pseudotuberculosisAdhesins, BacterialeaeA protein, E coliEscherichia coli Proteinsinvasin, YersiniaRecombinant Fusion ProteinsVirulence Factors

Identifiers

PMID22658748
PMCPMC3392549
OpenAlexW2120341571

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.