Evidence map›Paper›PMID 22658721›Full record

ArticleMolecular cell2012

Atl1 regulates choice between global genome and transcription-coupled repair of O(6)-alkylguanines.

Vitaly F Latypov, Julie L Tubbs, Amanda J Watson, Andrew S Marriott, Gail McGown, Mary Thorncroft, Oliver J Wilkinson, Pattama Senthong, Amna Butt, Andrew S Arvai and 6 more

Open access · bronzeAbstract read
In one paragraph

Article in Molecular cell, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 38 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Article
  6. Review
  7. Article
  8. The complexity and regulation of repair of alkylation damage to nucleic acids.Critical reviews in biochemistry and molecular biology · 2021
    Review
  9. Review
  10. Alkyltransferase-like protein clusters scan DNA rapidly over long distances and recruit NER to alkyl-DNA lesions.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  11. International journal of molecular sciences · 2020
    Review
  12. Article
  13. NCells · 2020
    Article
  14. Article
  15. Review
  16. RNA polymerase between lesion bypass and DNA repair.Cellular and molecular life sciences : CMLS · 2013
    Review
  17. Nucleotide excision repair in eukaryotes.Cold Spring Harbor perspectives in biology · 2013
    Review
  18. Article
  19. Review
  20. Alkyltransferase-like protein (Atl1) distinguishes alkylated guanines for DNA repair using cation-π interactions.Proceedings of the National Academy of Sciences of the United States of America · 2012
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

16 authors at 4 institutions in 2 countries.

Vitaly F LatypovCancer Research UK Carcinogenesis Group, Paterson Institute for Cancer Research, University of Manchester, Manchester M20 4BX, UK.
Julie L Tubbs
Amanda J Watson
Andrew S Marriott
Gail McGown
Mary Thorncroft
Oliver J Wilkinson
Pattama Senthong
Amna Butt
Andrew S Arvai
Christopher L Millington
Andrew C Povey
David M Williams
Mauro F Santibanez-Koref
John A Tainer
Geoffrey P Margison
University of Manchester · GBScripps Research Institute · USUniversity of Sheffield · GBNewcastle University · GB

Funding

Structural Biochemistry of DNA DealkylationR01CA097209 · NCI · SCRIPPS RESEARCH INSTITUTE, THE · PI TAINER, JOHN A. · 2002 to 2014
$4.4M
Biotechnology and Biological Sciences Research CouncilCancer Research UKNCI NIH HHS CA097209NCI NIH HHS R01 CA097209
6 · The paper itself

Abstract

Nucleotide excision repair (NER) has long been known to remove DNA lesions induced by chemical carcinogens, and the molecular mechanism has been partially elucidated. Here we demonstrate that in Schizosaccharomyces pombe a DNA recognition protein, alkyltransferase-like 1 (Atl1), can play a pivotal role in selecting a specific NER pathway, depending on the nature of the DNA modification. The relative ease of dissociation of Atl1 from DNA containing small O(6)-alkylguanines allows accurate completion of global genome repair (GGR), whereas strong Atl1 binding to bulky O(6)-alkylguanines blocks GGR, stalls the transcription machinery, and diverts the damage to transcription-coupled repair. Our findings redraw the initial stages of the NER process in those organisms that express an alkyltransferase-like gene and raise the question of whether or not O(6)-alkylguanine lesions that are poor substrates for the alkyltransferase proteins in higher eukaryotes might, by analogy, signal such lesions for repair by NER.

Indexed as

DNA RepairAlkyl and Aryl TransferasesBlotting, WesternCrystallography, X-RayDNA DamageDNA, FungalFlow CytometryG1 PhaseGenome, FungalGuanineMethylnitronitrosoguanidineModels, MolecularMutationNitrosourea CompoundsNucleic Acid ConformationProtein BindingAlkyl and Aryl TransferasesATL1 protein, S pombeDNA, FungalGuanineMethylnitronitrosoguanidineN-benzylnitrosoureaNitrosourea CompoundsO-(6)-methylguanineSchizosaccharomyces pombe Proteins

Identifiers

PMID22658721
PMCPMC3398191
OpenAlexW2126287518

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.