ArticleFrontiers in genetics2012
Three ontologies to define phenotype measurement data.
Article in Frontiers in genetics, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.
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Who cites it
37 citing papers in PubMed.
- DNAviWEB: sequencing-free clinical screening of liquid biopsies.Nucleic acids research · 2026Article
- Mapping of EFO terms from the GWAS catalog data to multiple ontologies at the Rat Genome Database.Database : the journal of biological databases and curation · 2026Article
- The Immunopeptidomics Ontology (ImPO).Database : the journal of biological databases and curation · 2024Article
- Supporting Nursing Efficiency by Understanding Workload: A Critical Need.Mayo Clinic proceedings. Digital health · 2023Article
- The Ontology of Biological Attributes (OBA)-computational traits for the life sciences.Mammalian genome : official journal of the International Mammalian Genome Society · 2023Article
- The Rat Genome Database: Genetic, Genomic, and Phenotypic Data Across Multiple Species.Current protocols · 2023Review
- A combinatorial approach implementing new database structures to facilitate practical data curation management of QTL, association, correlation and heritability data on trait variants.Database : the journal of biological databases and curation · 2023Article
- The Ontology of Biological Attributes (OBA) - Computational Traits for the Life Sciences.bioRxiv : the preprint server for biology · 2023Article
- Pancreatlas: Applying an Adaptable Framework to Map the Human Pancreas in Health and Disease.Patterns (New York, N.Y.) · 2020Article
- Organizing genome engineering for the gigabase scale.Nature communications · 2020Review
- The Year of the Rat: The Rat Genome Database at 20: a multi-species knowledgebase and analysis platform.Nucleic acids research · 2020Article
- Quantitative phenotype analysis to identify, validate and compare rat disease models.Database : the journal of biological databases and curation · 2019Article
- Ensembl 2018.Nucleic acids research · 2018Article
- Mouse Phenome Database: an integrative database and analysis suite for curated empirical phenotype data from laboratory mice.Nucleic acids research · 2018Article
- Modifier Ontologies for frequency, certainty, degree, and coverage phenotype modifier.Biodiversity data journal · 2018Article
- Rat Genome and Model Resources.ILAR journal · 2017Review
- Classification and analysis of a large collection of in vivo bioassay descriptions.PLoS computational biology · 2017Article
- A Diagnostic Marker to Discriminate Childhood Apraxia of Speech From Speech Delay: I. Development and Description of the Pause Marker.Journal of speech, language, and hearing research : JSLHR · 2017Review
- The Problems of Realism-Based Ontology Design: a Case Study in Creating Definitions for an Application Ontology for Diabetes Camps.AMIA ... Annual Symposium proceedings. AMIA Symposium · 2017Article
- The digital revolution in phenotyping.Briefings in bioinformatics · 2016Article
Corrections and comments
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Authors and funding
7 authors.
Funding
Abstract
backgroundThere is an increasing need to integrate phenotype measurement data across studies for both human studies and those involving model organisms. Current practices allow researchers to access only those data involved in a single experiment or multiple experiments utilizing the same protocol.
resultsThree ontologies were created: Clinical Measurement Ontology, Measurement Method Ontology and Experimental Condition Ontology. These ontologies provided the framework for integration of rat phenotype data from multiple studies into a single resource as well as facilitated data integration from multiple human epidemiological studies into a centralized repository.
conclusionAn ontology based framework for phenotype measurement data affords the ability to successfully integrate vital phenotype data into critical resources, regardless of underlying technological structures allowing the user to easily query and retrieve data from multiple studies.
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